Archive BacDiveID:10.13145/bacdive11134.20241212.9.2

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BacDive ID 11134

Type strain

Culture col. no. DSM 19318 KCTC 19288 MSL 11 JCM 31491

NCBI tax ID(s) 433652

Links

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For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 8033

BacDive-ID: 11134

DSM-Number: 19318

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Nocardioides dilutus DSM 19318 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from farming field.

NCBI tax id

NCBI tax id: 433652
Matching level: species

strain history

@ref	history
8033	<- C.-J. Kim <- Y.-J. Ju; MSL-11
67770	KCTC 19288 <-- C.-J. Kim; KRIBB, South Korea; MSL-11.
67771	<- CJ Kim, KRIBB

doi: 10.13145/bacdive11134.20241212.9.2

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Propionibacteriales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides dilutus
full scientific name: Nocardioides dilutus corrig. Dastager et al. 2009
synonyms
- @ref: 20215
- synonym: Nocardioides dilutes

@ref: 8033

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Nocardioides

species: Nocardioides dilutus

full scientific name: Nocardioides dilutus Dastager et al. 2009

type strain: yes

Morphology

cell morphology

@ref: 67771
gram stain: positive

Culture and growth conditions

culture medium

@ref: 8033
name: R2A MEDIUM (DSMZ Medium 830)
growth: yes
link: https://mediadive.dsmz.de/medium/830
composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@ref	growth	type	temperature
8033	positive	growth	28
67770	positive	growth	28
67771	positive	growth	30

Physiology and metabolism

oxygen tolerance

@ref: 67771
oxygen tolerance: aerobe

observation

@ref: 67770
observation: quinones: MK-8(H₄)

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
8033	farming field	Bikeum island	Republic of Korea	KOR	Asia
67770	Soil	Bigeum Island	Republic of Korea	KOR	Asia
67771	From farming field	Bikeum island	Republic of Korea	KOR	Asia

isolation source categories

Cat1: #Engineered
Cat2: #Agriculture
Cat3: #Field

taxonmaps

@ref: 69479
File name: preview.99_55649.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_24809;97_31058;98_39744;99_55649&stattab=map
Last taxonomy: Nocardioides dilutus
16S sequence: EF466121
Sequence Identity:
Total samples: 5641
soil counts: 3359
aquatic counts: 588
animal counts: 732
plant counts: 962

Safety information

risk assessment

@ref: 8033
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 8033
description: Nocardioides dilutus strain MSL-11 16S ribosomal RNA gene, partial sequence
accession: EF466121
length: 1418
database: nuccore
NCBI tax ID: 433652

GC content

@ref	GC-content	method
8033	71.8
67770	71.8	high performance liquid chromatography (HPLC)

External links

@ref: 8033

culture collection no.: DSM 19318, KCTC 19288, MSL 11, JCM 31491

straininfo link

@ref: 80383
straininfo: 401771

literature

topic: Phylogeny
Pubmed-ID: 18363057
title: Nocardioides dilutes sp. nov. isolated from soil in Bigeum Island, Korea.
authors: Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ
journal: Curr Microbiol
DOI: 10.1007/s00284-008-9125-9
year: 2008
mesh: Actinomycetales/chemistry/*classification/genetics/*isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis/metabolism, Korea, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
topic2: Genetics

Reference

@id	authors	catalogue	doi/url	title
8033	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19318)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-19318
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
67771	Curators of the KCTC		https://kctc.kribb.re.kr/En/Kctc
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
80383	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID401771.1	StrainInfo: A central database for resolving microbial strain identifiers

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General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

synonyms

Morphology

cell morphology

Culture and growth conditions

culture medium

culture temp

Physiology and metabolism

oxygen tolerance

observation

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Safety information

risk assessment

Sequence information

16S sequences

GC content

External links

straininfo link

literature

Reference

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