@ref: 7657
BacDive-ID: 1255
DSM-Number: 18680
keywords: genome sequence, 16S sequence, facultative anaerobe, spore-forming, thermophilic, Gram-positive, motile, rod-shaped
description: Mesobacillus selenatarsenatis SF-1 is a facultative anaerobe, spore-forming, thermophilic prokaryote that was isolated from effluent drain in a glass-manufacturing plant.
| @ref | history |
|---|---|
| 7657 | <- M. Ike; SF-1 |
| 67770 | M. Ike SF-1. |
doi: 10.13145/bacdive1255.20251217.10
@ref: 7657
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Mesobacillus
species: Mesobacillus selenatarsenatis
full scientific name: Mesobacillus selenatarsenatis (Yamamura et al. 2007) Patel and Gupta 2020
strain designation: SF-1
type strain: yes
| @ref | growth | type | temperature |
|---|---|---|---|
| 7657 | positive | growth | 40 |
| 31929 | positive | growth | 25-40 |
| 31929 | positive | optimum | 32.5 |
| 67770 | positive | growth | 30 |
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31929 | positive | growth | 7.5-9 | alkaliphile |
| 31929 | positive | optimum | 8.25 |
| @ref | spore formation | confidence |
|---|---|---|
| 31929 | yes | |
| 125438 | yes | 92.748 |
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31929 | NaCl | positive | growth | 02-05 % |
| 31929 | NaCl | positive | optimum | 3.5 % |
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31929 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
| 31929 | 17057 | cellobiose | + | carbon source |
| 31929 | 28757 | fructose | + | carbon source |
| 31929 | 5291 | gelatin | + | carbon source |
| 31929 | 17234 | glucose | + | carbon source |
| 31929 | 28087 | glycogen | + | carbon source |
| 31929 | 17306 | maltose | + | carbon source |
| 31929 | 17814 | salicin | + | carbon source |
| 31929 | 17992 | sucrose | + | carbon source |
| 31929 | 27082 | trehalose | + | carbon source |
| 31929 | 18222 | xylose | + | carbon source |
| 31929 | 4853 | esculin | + | hydrolysis |
| 31929 | 17632 | nitrate | + | reduction |
| @ref | value | activity | ec |
|---|---|---|---|
| 31929 | catalase | + | 1.11.1.6 |
| 31929 | gelatinase | + |
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7657 | effluent drain in a glass-manufacturing plant | Osaka | Japan | JPN | Asia |
| 67770 | Selenium-contaminated sediment obtained from an effluent drain of a glass-manufacturing plant | Japan | JPN | Asia |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Plant (Factory) |
| #Engineered | #Waste | #Industrial wastewater |
| #Engineered | #Waste | #Wastewater |
| @ref | GC-content | method |
|---|---|---|
| 7657 | 42.8 | |
| 67770 | 42.8 | high performance liquid chromatography (HPLC) |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 79.147 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.807 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 61.648 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.748 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 91.945 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 82.667 | no |
@ref: 7657
culture collection no.: DSM 18680, JCM 14380, FERM P-15431
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17473259 | Bacillus selenatarsenatis sp. nov., a selenate- and arsenate-reducing bacterium isolated from the effluent drain of a glass-manufacturing plant. | Yamamura S, Yamashita M, Fujimoto N, Kuroda M, Kashiwa M, Sei K, Fujita M, Ike M | Int J Syst Evol Microbiol | 10.1099/ijs.0.64667-0 | 2007 | Aerobiosis, Arsenates/*metabolism, Bacillus/*classification/genetics/isolation & purification/*metabolism, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, *Industrial Waste, Japan, Molecular Sequence Data, Nitrates/metabolism, Nucleic Acid Hybridization, Oxidation-Reduction, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Selenic Acid, Selenium Compounds/*metabolism, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Water Microbiology | Metabolism |
| Metabolism | 18767680 | Removal of arsenic from contaminated soils by microbial reduction of arsenate and quinone. | Yamamura S, Watanabe M, Kanzaki M, Soda S, Ike M | Environ Sci Technol | 10.1021/es703146f | 2008 | Arsenates/*metabolism, Arsenic/*chemistry, Bacillus/*metabolism, Benzoquinones/*metabolism, Biodegradation, Environmental, Soil/*analysis, Soil Pollutants/metabolism | |
| Phylogeny | 19567559 | Bacillus canaveralius sp. nov., an alkali-tolerant bacterium isolated from a spacecraft assembly facility. | Newcombe D, Dekas A, Mayilraj S, Venkateswaran K | Int J Syst Evol Microbiol | 10.1099/ijs.0.009167-0 | 2009 | Alkalies/*pharmacology, Anti-Bacterial Agents/*pharmacology, Bacillus/*classification/drug effects/genetics/*isolation & purification, Bacterial Typing Techniques, Carbohydrate Metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Drug Resistance, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Spacecraft | Metabolism |
| Enzymology | 21357486 | Molecular cloning and characterization of the srdBCA operon, encoding the respiratory selenate reductase complex, from the selenate-reducing bacterium Bacillus selenatarsenatis SF-1. | Kuroda M, Yamashita M, Miwa E, Imao K, Fujimoto N, Ono H, Nagano K, Sei K, Ike M | J Bacteriol | 10.1128/JB.01197-10 | 2011 | Amino Acid Sequence, Bacillus/classification/*enzymology, Bacterial Proteins/genetics/*metabolism, Base Sequence, *Cloning, Molecular, Gene Expression Regulation, Bacterial/physiology, Gene Expression Regulation, Enzymologic/physiology, Mutation, Operon/*genetics, Oxidoreductases/genetics/*metabolism, Phylogeny, Protein Structure, Tertiary, Selenic Acid, Selenium Compounds/*metabolism | Phylogeny |
| Genetics | 25614571 | Draft Genome Sequence of Bacillus selenatarsenatis SF-1T, a Promising Agent for Bioremediation of Environments Contaminated with Selenium and Arsenic. | Kuroda M, Ayano H, Sei K, Yamashita M, Ike M | Genome Announc | 10.1128/genomeA.01466-14 | 2015 | ||
| Phylogeny | 33398397 | Mesobacillus aurantius sp. nov., isolated from an orange-colored pond near a solar saltern. | Rai A, Smita N, Shabbir A, Jagadeeshwari U, Keertana T, Sasikala C, Ramana CV | Arch Microbiol | 10.1007/s00203-020-02146-w | 2021 | Bacillaceae/chemistry/classification/isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, India, Phospholipids/analysis, *Phylogeny, *Ponds/microbiology, RNA, Ribosomal, 16S/genetics, Species Specificity | Enzymology |
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 7657 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18680) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18680 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 31929 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28186 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | 10.1093/database/baaf059 | StrainInfo—the central database for linked microbial strain identifiers |
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