Archive BacDiveID:10.13145/bacdive12701.20250331.9.3

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BacDive ID 12701

Type strain

Strain Designation A 37-1-2

Culture col. no. DSM 18437 LMG 23753 A 37-1-2

NCBI tax ID(s) 394751

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For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 7470

BacDive-ID: 12701

DSM-Number: 18437

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, motile, rod-shaped

description: Pseudoalteromonas arctica A 37-1-2 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from arctic seawater.

NCBI tax id

NCBI tax id: 394751
Matching level: species

strain history

@ref: 7470
history: <- R. Al Khudary and G. Antranikian, Hamburg Univ. Technol., Germany; A 37-1-2 <- T. Grudieva

doi: 10.13145/bacdive12701.20250331.9.3

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas arctica
full scientific name: Pseudoalteromonas arctica Al Khudary et al. 2008

@ref: 7470

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas arctica

full scientific name: Pseudoalteromonas arctica Al Khudary et al. 2008

strain designation: A 37-1-2

type strain: yes

Morphology

cell morphology

@ref	gram stain	cell length	cell shape	motility	confidence
32098	negative	0.4-0.7 µm	rod-shaped	yes
125438	negative				100
125439	negative				99.1

pigmentation

@ref: 32098
production: yes

Culture and growth conditions

culture medium

@ref: 7470
name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
growth: yes
link: https://mediadive.dsmz.de/medium/514
composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@ref	growth	type	temperature
7470	positive	growth	20
32098	positive	growth	04-25
32098	positive	optimum	10-15

culture pH

@ref	ability	type	pH
32098	positive	growth	06-08
32098	positive	optimum	07-08

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance	confidence
32098	aerobe
125439	obligate aerobe	95.7

spore formation

@ref	spore formation	confidence
32098	no
125439	no	97.7

halophily

@ref	salt	growth	tested relation	concentration
32098	NaCl	positive	growth	0-9 %
32098	NaCl	positive	optimum	02-03 %

observation

@ref: 32098
observation: aggregates in chains

metabolite utilization

@ref	Chebi-ID	metabolite	utilization activity	kind of utilization tested
32098	16449	alanine	+	carbon source
32098	27689	decanoate	+	carbon source
32098	17057	cellobiose	+	carbon source
32098	23652	dextrin	+	carbon source
32098	28260	galactose	+	carbon source
32098	24265	gluconate	+	carbon source
32098	17234	glucose	+	carbon source
32098	17306	maltose	+	carbon source
32098	29864	mannitol	+	carbon source
32098	28053	melibiose	+	carbon source
32098	51850	methyl pyruvate	+	carbon source
32098	17992	sucrose	+	carbon source

Isolation, sampling and environmental information

isolation

@ref: 7470
sample type: arctic seawater
geographic location: Spitzbergen
country: Norway
origin.country: NOR
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic
#Condition	#Psychrophilic (<10°C)
#Climate	#Cold	#Polar

Safety information

risk assessment

@ref: 7470
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 7470
description: Pseudoalteromonas arctica strain A 37-1-2 16S ribosomal RNA gene, partial sequence
accession: DQ787199
length: 1499
database: nuccore
NCBI tax ID: 394751

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Pseudoalteromonas arctica A 37-1-2	GCA_000238395	complete	ncbi	1117313
66792	Pseudoalteromonas arctica A 37-1-2	1117313.12	plasmid	patric	1117313
66792	Pseudoalteromonas arctica A 37-1-2	1117313.3	wgs	patric	1117313
66792	Pseudoalteromonas arctica A 37-1-2	2775507288	complete	img	1117313

GC content

@ref	GC-content	method
7470	39	high performance liquid chromatography (HPLC)
32098	39

Genome-based predictions

predictions

@ref	model	trait	description	prediction	confidence	training_data
125439	BacteriaNet	oxygen_tolerance	Oxygenic conditions needed for growth	obligate aerobe	95.7
125439	BacteriaNet	gram_stain	Reaction to gram-staining	negative	99.1
125439	BacteriaNet	motility	Ability to perform movement	no	55.4
125439	BacteriaNet	spore_formation	Ability to form endo- or exospores	no	97.7
125438	gram-positive	gram-positive	Positive reaction to Gram-staining	no	100	yes
125438	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	96.111	yes
125438	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	yes	75.329	no
125438	spore-forming	spore-forming	Ability to form endo- or exospores	no	87.81	yes
125438	thermophile	thermophilic	Ability to grow at temperatures above or equal to 45°C	no	97	no
125438	motile2+	flagellated	Ability to perform flagellated movement	yes	86.651	no

External links

@ref: 7470

culture collection no.: DSM 18437, LMG 23753

straininfo link

@ref: 81911
straininfo: 291688

literature

topic: Phylogeny
Pubmed-ID: 18768597
title: Pseudoalteromonas arctica sp. nov., an aerobic, psychrotolerant, marine bacterium isolated from Spitzbergen.
authors: Al Khudary R, Stosser NI, Qoura F, Antranikian G
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijs.0.64963-0
year: 2008
mesh: Anaerobiosis, Arctic Regions, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Carboxylic Acids/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella, Genes, rRNA, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pseudoalteromonas/*classification/genetics/*isolation & purification/physiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature
topic2: Metabolism

Reference

@id	authors	catalogue	doi/url	title	ID_cross_reference	pubmed
7470	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18437)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-18437
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32098	Barberan A, Caceres Velazquez H, Jones S, Fierer N.		10.1128/mSphere.00237-17	Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information	28343	28776041
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
81911	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID291688.1	StrainInfo: A central database for resolving microbial strain identifiers
125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann		10.1101/2024.08.12.607695	Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy		https://github.com/GenomeNet/deepG	deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1

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Archive

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

Morphology

cell morphology

pigmentation

Culture and growth conditions

culture medium

culture temp

culture pH

Physiology and metabolism

oxygen tolerance

spore formation

halophily

observation

metabolite utilization

Isolation, sampling and environmental information

isolation

isolation source categories

Safety information

risk assessment

Sequence information

16S sequences

Genome sequences

GC content

Genome-based predictions

predictions

External links

straininfo link

literature

Reference

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