Archive BacDiveID:10.13145/bacdive130285.20241212.9.2

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BacDive ID 130285

Type strain

Strain Designation AI915-01

Culture col. no. DSM 26338 VKM B-2744 AI915-01

NCBI tax ID(s) 1256678

Links

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For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 21887

BacDive-ID: 130285

DSM-Number: 26338

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Desulfonatronum zhilinae AI915-01 is an anaerobe, mesophilic bacterium that was isolated from soda lake bottom sediments.

NCBI tax id

NCBI tax id: 1256678
Matching level: species

strain history

@ref: 21887
history: <- A. Zakharyuk, Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Science, Pushchino, Russia; AI915-01 <- A. Zakharyuk; {2008}

doi: 10.13145/bacdive130285.20241212.9.2

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfonatronaceae
genus: Desulfonatronum
species: Desulfonatronum zhilinae
full scientific name: Desulfonatronum zhilinae Zakharyuk et al. 2016

@ref: 21887

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfonatronaceae

genus: Desulfonatronum

species: Desulfonatronum zhilinae

full scientific name: Desulfonatronum zhilinae Zakharyuk et al. 2016

strain designation: AI915-01

type strain: yes

Morphology

colony morphology

@ref: 21887
incubation period: 3-7 days

Culture and growth conditions

culture medium

@ref: 21887
name: DESULFONATRONUM ZHILINAE MEDIUM (DSMZ Medium 1101a)
growth: yes
link: https://mediadive.dsmz.de/medium/1101a
composition: Name: DESULFONATRONUM ZHILINAE MEDIUM (DSMZ Medium 1101a) Composition: NaCl 24.9252 g/l Na2SO4 2.99103 g/l Na-L-lactate 2.19342 g/l NaHCO3 1.84447 g/l Na2CO3 1.19641 g/l Na2S x 9 H2O 0.498504 g/l K2HPO4 0.498504 g/l Yeast extract 0.199402 g/l MgCl2 x 6 H2O 0.0997009 g/l EDTA 0.00498504 g/l FeSO4 x 7 H2O 0.00219342 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l CoCl2 x 6 H2O 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l Nicotinic acid 0.000199402 g/l Calcium pantothenate 9.97009e-05 g/l ZnSO4 x 7 H2O 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l CuCl2 x 2 H2O 2.99103e-05 g/l Na2MoO4 x 2 H2O 2.99103e-05 g/l NiCl2 x 6 H2O 2.99103e-05 g/l MnCl2 x 4 H2O 2.99103e-05 g/l H3BO3 2.99103e-05 g/l D-(+)-biotin 1.99402e-05 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l Distilled water

culture temp

@ref: 21887
growth: positive
type: growth
temperature: 35

Physiology and metabolism

oxygen tolerance

@ref: 21887
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref: 21887
sample type: soda lake bottom sediments
geographic location: South Buryatia, Alginskoe Lake (53° 37' N, 109° 38' E)
country: Russia
origin.country: RUS
continent: Asia
latitude: 53.6167
longitude: 109.633

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Alkaline

taxonmaps

@ref: 69479
File name: preview.99_7546.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_453;96_2133;97_2569;98_3184;99_7546&stattab=map
Last taxonomy: Desulfonatronum
16S sequence: JX984981
Sequence Identity:
Total samples: 75
soil counts: 8
aquatic counts: 59
animal counts: 8

Safety information

risk assessment

@ref: 21887
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 21887
description: Desulfonatronum zhilinae strain Al915-01 16S ribosomal RNA gene, partial sequence
accession: JX984981
length: 1523
database: nuccore
NCBI tax ID: 1256678

GC content

@ref: 21887
GC-content: 58.3
method: thermal denaturation, midpoint method (Tm)

External links

@ref: 21887

culture collection no.: DSM 26338, VKM B-2744

straininfo link

@ref: 88820
straininfo: 401126

literature

topic: Phylogeny
Pubmed-ID: 25841751
title: Desulfonatronum zhilinae sp. nov., a novel haloalkaliphilic sulfate-reducing bacterium from soda Lake Alginskoe, Trans-Baikal Region, Russia.
authors: Zakharyuk AG, Kozyreva LP, Khijniak TV, Namsaraev BB, Shcherbakova VA
journal: Extremophiles
DOI: 10.1007/s00792-015-0747-0
year: 2015
mesh: Deltaproteobacteria/classification/*isolation & purification/metabolism, Lakes/*microbiology, Salt Tolerance, Siberia, Sulfates/metabolism
topic2: Metabolism

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
21887	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-26338	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26338)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
88820	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID401126.1

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Archive

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

Morphology

colony morphology

Culture and growth conditions

culture medium

culture temp

Physiology and metabolism

oxygen tolerance

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Safety information

risk assessment

Sequence information

16S sequences

GC content

External links

straininfo link

literature

Reference

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