@ref: 21684
BacDive-ID: 130466
DSM-Number: 46765
keywords: genome sequence, 16S sequence, mesophilic
description: Mycobacterium celeriflavum AFPC-000207 is a mesophilic prokaryote that was isolated from sputum of a patient suffering from chronic obstructive pulmonary disease .
| @ref | history |
|---|---|
| 21684 | <- E. Tortoli, Milano,Italy; AFPC000207 <- P. Heidarieh |
| 67770 | A. H. Shahraki AFPC-000207. |
doi: 10.13145/bacdive130466.20251217.10
@ref: 21684
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium celeriflavum
full scientific name: Mycobacterium celeriflavum Shahraki et al. 2015 emend. Nouioui et al. 2018
strain designation: AFPC-000207
type strain: yes
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | positive | 98.1 |
| 125438 | positive | 91.414 |
| @ref | growth | type | temperature |
|---|---|---|---|
| 21684 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 21684 | sputum of a patient suffering from chronic obstructive pulmonary disease (COPD) | Ahvaz | Iran | IRN | Asia |
| 67770 | Pulmonary specimen of a patient |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Inflammation | |
| #Infection | #Patient | |
| #Host Body Product | #Fluids | #Sputum |
| @ref | description | assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | score |
|---|---|---|---|---|---|---|---|
| 66792 | ASM1073179v1 assembly for Mycolicibacterium celeriflavum JCM 18439 | complete | GCA_010731795 | 1249101.10 | 8112680517 | 1249101 | 97.95 |
| 67770 | ASM208617v1 assembly for Mycolicibacterium celeriflavum DSM 46765 | contig | GCA_002086175 | 1249101.3 | 8113365519 | 1249101 | 53.57 |
| 66792 | ASM2582262v1 assembly for Mycolicibacterium celeriflavum DSM 46765 | contig | GCA_025822625 | 1249101.12 | 8115329780 | 1249101 | 67.87 |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 98.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 82 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 54.8 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.414 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.241 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 84.31 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 60.517 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.4 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 88.944 | no |
@ref: 21684
culture collection no.: DSM 46765, JCM 18439
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25278573 | Microbiological features and clinical relevance of new species of the genus Mycobacterium. | Tortoli E. | Clin Microbiol Rev | 10.1128/cmr.00035-14 | 2014 | classification, microbiology | |
| Phylogeny | 25389151 | Mycobacterium celeriflavum sp. nov., a rapidly growing scotochromogenic bacterium isolated from clinical specimens. | Shahraki AH, Cavusoglu C, Borroni E, Heidarieh P, Koksalan OK, Cabibbe AM, Hashemzadeh M, Mariottini A, Mostafavi E, Cittaro D, Feizabadi MM, Lazarevic D, Yaghmaei F, Molinari GL, Camaggi A, Tortoli E | Int J Syst Evol Microbiol | 10.1099/ijs.0.064832-0 | 2014 | Adult, Aged, Bacterial Typing Techniques, Child, Preschool, DNA, Bacterial/genetics, Female, Genes, Bacterial, Humans, Iran, Male, Microbial Sensitivity Tests, Middle Aged, Molecular Sequence Data, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/*microbiology, Mycolic Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Turkey | Pathogenicity |
| Phylogeny | 29497402 | Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera. | Gupta RS, Lo B, Son J. | Front Microbiol | 10.3389/fmicb.2018.00067 | 2018 | Phylogenomic Analysis, Mycobacterium Classification, Abscessus-chelonae Clade, Conserved Signature Indels And Signature Proteins, Fortuitum-vaccae Clade, Slow-growing And Fast-growing Mycobacteria, Terrae Clade, Triviale Clade | |
| Genetics | 36299734 | Characterization of Mycobacterium salfingeri sp. nov.: A novel nontuberculous mycobacteria isolated from a human wound infection. | Musser E, Smith C, Halse TA, Kohlerschmidt D, Rourke A, Fiero A, Musser KA, Escuyer V, Lapierre P. | Front Microbiol | 10.3389/fmicb.2022.992610 | 2022 | Genome, Nontuberculous Mycobacteria, Human Pathogen, Novel Species, Mycobacterium Salfingeri |
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21684 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46765 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46765) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG | |
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | StrainInfo—the central database for linked microbial strain identifiers | 10.1093/database/baaf059 |
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