@ref: 16060
BacDive-ID: 1312
DSM-Number: 21943
keywords: genome sequence, 16S sequence, mesophilic
description: Shouchella xiaoxiensis DSM 21943 is a mesophilic prokaryote that was isolated from forest soil.
doi: 10.13145/bacdive1312.20251217.10
| @ref | synonym |
|---|---|
| 20215 | Alkalihalobacillus xiaoxiensis |
| 20215 | Bacillus xiaoxiensis |
@ref: 16060
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Shouchella
species: Shouchella xiaoxiensis
full scientific name: Shouchella xiaoxiensis (Chen et al. 2011) Joshi et al. 2022
type strain: yes
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 81.586 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.988 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 81.299 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 94.39 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 93.12 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 81.439 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 87.3 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 87.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 76 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.4 |
@ref: 16060
culture collection no.: DSM 21943, CCTCC AA 208057, JSM 081004
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20870888 | Bacillus xiaoxiensis sp. nov., a slightly halophilic bacterium isolated from non-saline forest soil. | Chen YG, Zhang YQ, Chen QH, Klenk HP, He JW, Tang SK, Cui XL, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.026286-0 | 2010 | Bacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/*metabolism, *Soil Microbiology, Trees | Genetics |
| Phylogeny | 25008165 | Bacillus shacheensis sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil. | Lei Z, Qiu P, Ye R, Tian J, Liu Y, Wang L, Tang SK, Li WJ, Tian Y | J Gen Appl Microbiol | DN/JST.JSTAGE/jgam/60.101 | 2014 | Bacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Soil Microbiology, Temperature, Vitamin K 2/analysis | Genetics |
| 34707580 | Alkalihalobacterium elongatum gen. nov. sp. nov.: An Antibiotic-Producing Bacterium Isolated From Lonar Lake and Reclassification of the Genus Alkalihalobacillus Into Seven Novel Genera. | Joshi A, Thite S, Karodi P, Joseph N, Lodha T. | Front Microbiol | 10.3389/fmicb.2021.722369 | 2021 | Lonar Lake, Alkaliphilic Bacteria, Alkalihalobacillus, Taxogenomic, Alkalihalobacterium, Halalkalibacter, Halalkalibacterium, Shouchella |
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16060 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21943) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21943 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | |
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | 10.1093/database/baaf059 | StrainInfo—the central database for linked microbial strain identifiers |
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