@ref: 23383
BacDive-ID: 131587
DSM-Number: 102561
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Acidovorax sp. Leaf84 is a mesophilic, Gram-negative bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
doi: 10.13145/bacdive131587.20250331.9.3
| @ref | synonym |
|---|---|
| 20215 | Paenacidovorax |
| 20215 | Paracidovorax |
@ref: 23383
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Acidovorax
species: Acidovorax sp.
full scientific name: Acidovorax sp.
strain designation: Leaf84
type strain: no
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 98 |
| 125439 | negative | 92.9 |
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 91.619 |
| 125439 | no | 96 |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acidovorax sp. Leaf84 | GCA_001422105 | contig | ncbi | 1736240 |
| 66792 | Acidovorax sp. Leaf84 | 1736240.3 | wgs | patric | 1736240 |
| 66792 | Acidovorax sp. Leaf84 | 2643221792 | draft | img | 1736240 |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.431 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.619 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.364 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.991 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 84.268 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 96 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 83.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 92.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 92.3 |
@ref: 23383
culture collection no.: DSM 102561
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23383 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102561 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102561) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89993 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396718.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |
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