@ref: 15695
BacDive-ID: 13163
DSM-Number: 21419
keywords: genome sequence, 16S sequence, aerobe, mesophilic, Gram-negative, rod-shaped
description: Pseudomonas duriflava HR2 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from desert soil.
doi: 10.13145/bacdive13163.20251217.10
@ref: 15695
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas duriflava
full scientific name: Pseudomonas duriflava Liu et al. 2008
strain designation: HR2
type strain: yes
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 32574 | negative | 0.9 µm | 0.7 µm | rod-shaped | no | |
| 125438 | negative | 98.75 | ||||
| 125439 | negative | 99.5 |
| @ref | growth | type | temperature |
|---|---|---|---|
| 15695 | positive | growth | 28 |
| 32574 | positive | growth | 05-42 |
| 32574 | positive | optimum | 33.5 |
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32574 | positive | growth | 05-09 | alkaliphile |
| 32574 | positive | optimum | 7.5 |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 32574 | aerobe | |
| 125438 | aerobe | 91.184 |
| @ref | spore formation | confidence |
|---|---|---|
| 32574 | no | |
| 125439 | no | 99.6 |
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32574 | NaCl | positive | growth | 0-2 % |
| 32574 | NaCl | positive | optimum | 0.5 % |
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32574 | 22599 | arabinose | + | carbon source |
| 32574 | 17057 | cellobiose | + | carbon source |
| 32574 | 28260 | galactose | + | carbon source |
| 32574 | 28053 | melibiose | + | carbon source |
| 32574 | 33942 | ribose | + | carbon source |
| 32574 | 4853 | esculin | + | hydrolysis |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Desert |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Xerophilic |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.75 | yes |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.59 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 83.889 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.184 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98.497 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 85.916 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 88.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.5 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 86.8 |
@ref: 15695
culture collection no.: DSM 21419, CGMCC 1.6858, KCTC 22129
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 15695 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21419) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21419 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32574 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28789 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | |||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | 10.1093/database/baaf059 | StrainInfo—the central database for linked microbial strain identifiers |
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