@ref: 23872
BacDive-ID: 132081
DSM-Number: 102431
keywords: genome sequence, mesophilic
description: Kitasatospora sp. Root187 is a mesophilic prokaryote that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .
doi: 10.13145/bacdive132081.20251217.10
@ref: 23872
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Kitasatospora
species: Kitasatospora sp.
full scientific name: Kitasatospora sp.
strain designation: Root187
type strain: no
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 92.5 | |
| 125438 | 90.109 | positive | |
| 125439 | 99.9 | positive | |
| 125439 | no | 92.5 |
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 23872 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 23872 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 125438 | aerobe | 91.417 |
| 125439 | aerobe | 98.4 |
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | yes | 90.336 |
| 125439 | yes | 95.4 |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.109 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.418 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.417 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.336 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.422 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 92.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 95.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 92.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 98.4 |
@ref: 23872
culture collection no.: DSM 102431
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23872 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102431 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102431) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG | |
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | StrainInfo—the central database for linked microbial strain identifiers | 10.1093/database/baaf059 |
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