Archive BacDiveID:10.13145/bacdive132269.20241212.9.2

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BacDive ID 132269

Type strain

Strain Designation NEAU-YJC4

Culture col. no. DSM 102129 CGMCC 4.7176 JCM 30053 NEAU-YJC4

NCBI tax ID(s) 1490215

Links

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For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24058

BacDive-ID: 132269

DSM-Number: 102129

keywords: 16S sequence, Bacteria, mesophilic

description: Catellatospora tagetis NEAU-YJC4 is a mesophilic bacterium that was isolated from Root of a marigold Tagetes erecta.

NCBI tax id

NCBI tax id: 1490215
Matching level: species

strain history

@ref	history
24058	<- JCM; JCM 30053 <- C. Liu; NEAU-YJC4
67770	C. Liu; Northeast Agric. Univ., China; NEAU-YJC4.

doi: 10.13145/bacdive132269.20241212.9.2

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micromonosporales
family: Micromonosporaceae
genus: Catellatospora
species: Catellatospora tagetis
full scientific name: Catellatospora tagetis Zhou et al. 2015

@ref: 24058

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Catellatospora

species: Catellatospora tagetis

full scientific name: Catellatospora tagetis Zhou et al. 2015

strain designation: NEAU-YJC4

type strain: yes

Morphology

multimedia

@ref: 24058
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102129.jpg
caption: Medium 65 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
24058	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
24058	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	yes	https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf

culture temp

@ref	growth	type	temperature
24058	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

observation

@ref: 67770
observation: quinones: MK-9(H₄), MK-8(H₆), MK-9(H₆)

Isolation, sampling and environmental information

isolation

@ref	sample type	host species	geographic location	country	origin.country	continent	latitude	longitude
24058	Root of a marigold Tagetes erecta	Tagetes erecta	Heilongjiang Province	China	CHN	Asia	45.05	125.217
67770	Root of a marigold (Tagetes erecta L.) in Heilongjiang Province	Tagetes erecta L.		China	CHN	Asia

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

taxonmaps

@ref: 69479
File name: preview.99_128570.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_3745;97_11741;98_14429;99_128570&stattab=map
Last taxonomy: Catellatospora tagetis
16S sequence: KJ522750
Sequence Identity:
Total samples: 545
soil counts: 369
aquatic counts: 73
animal counts: 17
plant counts: 86

Safety information

risk assessment

@ref: 24058
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 24058
description: Catellatospora tagetis strain NEAU-YJC4 16S ribosomal RNA gene, partial sequence
accession: KJ522750
length: 1516
database: nuccore
NCBI tax ID: 1490215

GC content

@ref	GC-content	method
24058	71.1	thermal denaturation, midpoint method (Tm)
67770	70.8-71.4	thermal denaturation, midpoint method (Tm)

External links

@ref: 24058

culture collection no.: DSM 102129, CGMCC 4.7176, JCM 30053

straininfo link

@ref: 90616
straininfo: 401791

literature

topic: Phylogeny
Pubmed-ID: 26111852
title: Catellatospora tagetis sp. nov., isolated from the root of a marigold (Tagetes erecta L.).
authors: Zhou Y, Liu C, Zhang Y, Zhao J, Li C, He H, Li J, Wang X, Xiang W
journal: Antonie Van Leeuwenhoek
DOI: 10.1007/s10482-015-0511-6
year: 2015
mesh: Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Micromonosporaceae/*classification/genetics/*isolation & purification/physiology, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tagetes/*microbiology
topic2: Genetics

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24058	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102129	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102129)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
90616	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID401791.1

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General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

Morphology

multimedia

Culture and growth conditions

culture medium

culture temp

Physiology and metabolism

observation

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Safety information

risk assessment

Sequence information

16S sequences

GC content

External links

straininfo link

literature

Reference

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