@ref: 24419
BacDive-ID: 132630
DSM-Number: 100523
keywords: genome sequence, 16S sequence, aerobe, Gram-positive, spore-shaped, pigmented
description: Streptomyces camponoticapitis 2H-TWYE14 is an aerobe, Gram-positive, spore-shaped prokaryote that has a greyish yellow pigmentation and was isolated from head of an ant .
doi: 10.13145/bacdive132630.20251217.10
@ref: 24419
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces camponoticapitis
full scientific name: Streptomyces camponoticapitis Li et al. 2016
strain designation: 2H-TWYE14
type strain: yes
| @ref | gram stain | cell shape | motility | confidence |
|---|---|---|---|---|
| 24892 | positive | spore-shaped | no | |
| 125439 | positive | 99.4 | ||
| 125438 | no | 91 | ||
| 125438 | positive | 92.209 |
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 24419 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| 24419 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| @ref | growth | type | temperature |
|---|---|---|---|
| 24892 | positive | growth | 10-37 |
| 24892 | positive | optimum | 28 |
| 24419 | positive | growth | 28 |
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 24892 | positive | growth | 6.0-10.0 | alkaliphile |
| 24892 | positive | optimum | 7.0-8.0 |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 24892 | aerobe | |
| 125438 | aerobe | 91.607 |
| 125439 | obligate aerobe | 98.2 |
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 24892 | 15824 | D-fructose | - | carbon source |
| 24892 | 17924 | D-sorbitol | - | carbon source |
| 24892 | 15428 | glycine | - | nitrogen source |
| 24892 | 17268 | myo-inositol | - | carbon source |
| 24892 | 16977 | L-alanine | - | nitrogen source |
| 24892 | 17115 | L-serine | - | nitrogen source |
| 24892 | 17716 | lactose | - | carbon source |
| 24892 | 17632 | nitrate | - | reduction |
| 24892 | 16634 | raffinose | - | carbon source |
| 24892 | 16919 | creatine | + | nitrogen source |
| 24892 | 12936 | D-galactose | + | carbon source |
| 24892 | 17634 | D-glucose | + | carbon source |
| 24892 | 16899 | D-mannitol | + | carbon source |
| 24892 | 16988 | D-ribose | + | carbon source |
| 24892 | 65327 | D-xylose | + | carbon source |
| 24892 | 30849 | L-arabinose | + | carbon source |
| 24892 | 16467 | L-arginine | + | nitrogen source |
| 24892 | 17196 | L-asparagine | + | nitrogen source |
| 24892 | 29991 | L-aspartate | + | nitrogen source |
| 24892 | 29985 | L-glutamate | + | nitrogen source |
| 24892 | 18050 | L-glutamine | + | nitrogen source |
| 24892 | 16857 | L-threonine | + | nitrogen source |
| 24892 | 17895 | L-tyrosine | + | nitrogen source |
| 24892 | 17306 | maltose | + | carbon source |
| 24892 | 17992 | sucrose | + | carbon source |
| @ref | value | activity | ec |
|---|---|---|---|
| 24892 | catalase | + | 1.11.1.6 |
| 24892 | esterase | + | |
| 24892 | urease | + | 3.5.1.5 |
| @ref | GC-content | method |
|---|---|---|
| 24892 | 71.7-72.7 | thermal denaturation, midpoint method (Tm) |
| 24419 | 72.2 | thermal denaturation, midpoint method (Tm) |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 92.209 | yes |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 90.168 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.607 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 89.068 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.5 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 91 | yes |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 76.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 86.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.2 |
@ref: 24419
culture collection no.: DSM 100523, CGMCC 4.7275
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 27381566 | Streptomyces camponoticapitis sp. nov., an actinomycete isolated from the head of an ant (Camponotus japonicus Mayr). | Li Y, Ye L, Wang X, Zhao J, Ma Z, Yan K, Xiang W, Liu C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001276 | 2016 | Animals, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 33783591 | Streptomyces liangshanensis sp. nov., a novel actinomycete isolated from rhizosphere soil of Fagopyrum tataricum. | Guo YH, Tang XK, Hu SR, Zhou ML, Gao J | Arch Microbiol | 10.1007/s00203-021-02294-7 | 2021 | *Actinobacteria/genetics, Bacterial Typing Techniques, DNA, Bacterial/genetics, *Fagopyrum/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, *Streptomyces/classification/genetics | Transcriptome |
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24419 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100523 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100523) | |||
| 24892 | Y. Y. Li, Lan,Wang, Xiangjing,Zhao, Junwei,Ma, Zhaoxu,Yan, Kai,Xiang, Wensheng,Liu, Chongxi | Streptomyces camponoticapitis sp. nov., an actinomycete isolated from the head of an ant (Camponotus japonicus Mayr) | 10.1099/ijsem.0.001276 | IJSEM 66: 3855-3859 2016 | 27381566 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG | |||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | StrainInfo—the central database for linked microbial strain identifiers | 10.1093/database/baaf059 |
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