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BacDive ID 132670
Type strain
Strain Designation S4702
Culture col. no. DSM 42103 CGMCC 4.7357 KCTC 29206 S4702
NCBI tax ID(s) 1128682
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 10 (current version):
version 10 (current version)

General

@ref: 24459

BacDive-ID: 132670

DSM-Number: 42103

keywords: genome sequence, 16S sequence, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces ovatisporus S4702 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1128682
  • Matching level: species

strain history

  • @ref: 24459
  • history: <- N. Sahin, Ondokuz Mayis University, Samsun, Turkey; S4702 <- A. Veyisoglu

doi: 10.13145/bacdive132670.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/bacillati
  • keyword: phylum/actinomycetota
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces ovatisporus
  • full scientific name: Streptomyces ovatisporus Veyisoglu et al. 2016

@ref: 24459

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces ovatisporus

full scientific name: Streptomyces ovatisporus Veyisoglu et al. 2016

strain designation: S4702

type strain: yes

Morphology

cell morphology

  • @ref: 24980
  • gram stain: positive
  • motility: no

multimedia

  • @ref: 24459
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42103.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24459STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
24459ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
24980N-Z-Amine agar (DSMZ-medium 554)yes
24459GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
24980positivegrowth28.0-37.0
24980negativegrowth4
24980negativegrowth10
24980negativegrowth20
24980negativegrowth40
24980negativegrowth45
24980negativegrowth50
24980negativegrowth55
24980positiveoptimum28
24459positivegrowth28

culture pH

@refabilitytypepHPH range
24980positivegrowth6.0-10.0alkaliphile
24980nogrowth4
24980nogrowth5
24980nogrowth11
24980nogrowth12
24980positiveoptimum7.2

Physiology and metabolism

oxygen tolerance

  • @ref: 24980
  • oxygen tolerance: aerobe

spore formation

  • @ref: 24980
  • spore description: ovate,smooth-surfaced (0.5-0.6 0.9-1.0 µm)
  • type of spore: spore
  • spore formation: yes

halophily

  • @ref: 24980
  • salt: NaCl
  • tested relation: maximum
  • concentration: 6 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2498016708adenine-degradation
2498015963ribitol-carbon source
24980casein-degradation
2498017924D-sorbitol-carbon source
2498016235guanine-degradation
2498024741hydroxyproline-nitrogen source
2498017368hypoxanthine-degradation
2498024898isoleucine-nitrogen source
2498016977L-alanine-nitrogen source
2498030849L-arabinose-carbon source
2498016643L-methionine-nitrogen source
2498017295L-phenylalanine-nitrogen source
2498017203L-proline-nitrogen source
2498017115L-serine-nitrogen source
2498017895L-tyrosine-nitrogen source
2498090608L-valine 2-naphthylamide-nitrogen source
2498017632nitrate-reduction
2498017992sucrose-carbon source
2498016199urea-hydrolysis
2498015318xanthine-degradation
2498037166xylan-degradation
2498015676allantoin+hydrolysis
2498018305arbutin+hydrolysis
2498017057cellobiose+carbon source
2498015356cysteine+nitrogen source
2498012936D-galactose+carbon source
2498016899D-mannitol+carbon source
2498016024D-mannose+carbon source
249806731melezitose+carbon source
2498023652dextrin+carbon source
249804853esculin+hydrolysis
2498015428glycine+nitrogen source
2498015443inulin+carbon source
2498016467L-arginine+nitrogen source
2498062345L-rhamnose+carbon source
2498016857L-threonine+nitrogen source
2498017716lactose+carbon source
2498017306maltose+carbon source
2498028017starch+degradation
2498017992sucrose+carbon source
2498053424tween 20+degradation
2498053423tween 40+degradation

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperatureisolation procedure
24459marine sedimentSamsun, Black Sea (41° 19.201' N and 036° 25.489 157' E at a depth of 42 m)TurkeyTURAsia41.3236.4248
24980non-sporulating mediumper litre distilled water: 20 g casamino acids, 20 g soluble starch, 4 g yeast-extract, 15 g agar,(pH 7.2â??7.4) , supplemented with filter-sterilised rifampicin (5 µg ml-1) and nystatin (50 µg ml-1)30 days28dilution-plating method

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Interaction and safety

risk assessment

  • @ref: 24459
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 124043
  • description: ASM4265388v1 assembly for Streptomyces ovatisporus CGMCC 4.7357
  • assembly level: scaffold
  • INSDC accession: GCA_042653885
  • NCBI tax ID: 1128682
  • score: 71.31

16S sequences

  • @ref: 24459
  • description: Streptomyces ovatisporus strain S4702 16S ribosomal RNA gene, partial sequence
  • accession: JN989306
  • length: 1400
  • database: nuccore
  • NCBI tax ID: 1128682

GC content

@refGC-contentmethod
2498072.5Thermal denaturation, fluorometry
2445972.5fluorimetric

Literature

@ref: 24459

culture collection no.: DSM 42103, CGMCC 4.7357, KCTC 29206

straininfo link

  • @ref: 126262
  • straininfo: 398278

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27553490Streptomyces ovatisporus sp. nov., isolated from deep marine sediment.Veyisoglu A, Cetin D, Inan Bektas K, Guven K, Sahin NInt J Syst Evol Microbiol10.1099/ijsem.0.0014422016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Turkey, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Pathogenicity33719978A Novel 4H-Chromen-4-One Derivative from Marine Streptomyces ovatisporus S4702(T) as Potential Antibacterial and Anti-Cancer Agent.Kurt-Kizildogan A, Akarsu N, Otur C, Kivrak A, Aslan-Ertas N, Arslan S, Mutlu D, Konus M, Yilmaz C, Cetin D, Topal T, Sahin NAnticancer Agents Med Chem10.2174/18715206216662103110857482022Anti-Bacterial Agents/chemistry/isolation & purification/*pharmacology, Antineoplastic Agents/chemistry/isolation & purification/*pharmacology, Antioxidants/chemistry/isolation & purification/*pharmacology, Apoptosis/drug effects, Benzothiazoles/antagonists & inhibitors, Cell Proliferation/drug effects, Cell Survival/drug effects, Cells, Cultured, Chromones/chemistry/isolation & purification/*pharmacology, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Humans, Microbial Sensitivity Tests, Molecular Structure, Phenethylamines/antagonists & inhibitors, Streptomyces/*chemistry, Structure-Activity Relationship, Sulfonic Acids/antagonists & inhibitorsEnzymology

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24459Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42103Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42103)
24980A. C. Veyisoglu, Demet,Inan Bektas, Kadriye,Guven, Kiymet,Sahin, NevzatStreptomyces ovatisporus sp. nov., isolated from deep marine sediment10.1099/ijsem.0.001442IJSEM 66: 4856-4863 201627553490
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. ReimerStrainInfo—the central database for linked microbial strain identifiers10.1093/database/baaf059

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