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BacDive ID 132692
Type strain
Strain Designation D310AT
Culture col. no. DSM 101185 KCTC 39657 D310AT
NCBI tax ID(s) 1735446
Links
version 10 (current version)

General

@ref: 24482

BacDive-ID: 132692

DSM-Number: 101185

keywords: 16S sequence, mesophilic

description: Actinomadura alkaliterrae D310AT is a mesophilic prokaryote that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1735446
  • Matching level: species

strain history

  • @ref: 24482
  • history: <- H. Ay, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey; D310AT

doi: 10.13145/bacdive132692.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/bacillati
  • keyword: phylum/actinomycetota
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinomadura
  • species: Actinomadura alkaliterrae
  • full scientific name: Actinomadura alkaliterrae Ay et al. 2017

@ref: 24482

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinomadura

species: Actinomadura alkaliterrae

full scientific name: Actinomadura alkaliterrae Ay et al. 2017

strain designation: D310AT

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24482N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
24482GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

culture temp

  • @ref: 24482
  • growth: positive
  • type: growth
  • temperature: 28

Isolation, sampling and environmental information

isolation

  • @ref: 24482
  • sample type: soil
  • geographic location: Konya, Acigol lake (located at 956 m)
  • country: Turkey
  • origin.country: TUR
  • continent: Asia
  • latitude: 37.0711
  • longitude: 33.0674

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Interaction and safety

risk assessment

  • @ref: 24482
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24482
  • description: Actinomadura alkaliterrae strain D310AT 16S ribosomal RNA gene, partial sequence
  • accession: KT876993
  • length: 1481
  • database: nuccore
  • NCBI tax ID: 1735446

Literature

@ref: 24482

culture collection no.: DSM 101185, KCTC 39657

straininfo link

  • @ref: 126262
  • straininfo: 405263

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28251351Actinomadura alkaliterrae sp. nov., isolated from an alkaline soil.Ay H, Nouioui I, Del Carmen Montero-Calasanz M, Carro L, Klenk HP, Goodfellow M, Igual JM, Cetin D, Sahin N, Isik KAntonie Van Leeuwenhoek10.1007/s10482-017-0850-62017Actinomycetaceae/isolation & purification/*metabolism, Bacterial Typing Techniques, DNA, Bacterial, Diaminopimelic Acid/metabolism, Fatty Acids, Nucleic Acid Hybridization, Phospholipids, *Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Soil, *Soil Microbiology, TurkeyMetabolism
28891789List of new names and new combinations previously effectively, but not validly, published.Oren A, Garrity GM.Int J Syst Evol Microbiol10.1099/ijsem.0.0022782017

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24482Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101185Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101185)
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. ReimerStrainInfo—the central database for linked microbial strain identifiers10.1093/database/baaf059