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BacDive ID 132840
Type strain
Culture col. no. DSM 104743 ATCC 29428 NCTC 11322 WDCM 00156 CCM 7212 CCUG 39973 CCUG 41359 CIP 103778 JCM 2013 VPI H840 BCRC 17705 CECT 8119 7 more
NCBI tax ID(s) 197
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.3 (current version):
version 9.3 (current version)

General

@ref: 24628

BacDive-ID: 132840

DSM-Number: 104743

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Campylobacter jejuni DSM 104743 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Diarrheic stool of child.

NCBI tax id

  • NCBI tax id: 197
  • Matching level: species

strain history

@refhistory
24628<- NCTC; NCTC 11322 <- ATCC; ATCC 29428 <- N. R. Krieg; VPI H840 <- P. Dekeyser
67770ATCC 29428 <-- N. R. Krieg VPI H840 <-- P. Dekeyser.
120332CIP <- 1993, ATCC <- N.R. Kreig: strain VPI H840, Campylobacter fetus subsp. jejuni <- Smibert <- P. Dekeyser

doi: 10.13145/bacdive132840.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter jejuni
  • full scientific name: Campylobacter jejuni (Jones et al. 1931) Véron and Chatelain 1973 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Vibrio jejuni

@ref: 24628

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter jejuni

full scientific name: Campylobacter jejuni (Jones et al. 1931) Véron and Chatelain 1973

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125438negative97.977
125439negative99.9
120332negativerod-shapedyes

colony morphology

  • @ref: 120332

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24628COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
120332Brucella brothyes
120332CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45
120332CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperature
24628positivegrowth37
67770positivegrowth37
120332positivegrowth30-41
120332nogrowth5
120332nogrowth15
120332nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 120332
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
125438no93.885
125439no99

halophily

  • @ref: 120332
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837325115malate-assimilation
6837330089acetate-assimilation
6837317632nitrate+reduction
6837378019triphenyltetrazolium chloride+reduction
6837316199urea-hydrolysis
120332606565hippurate+hydrolysis
12033217632nitrate+reduction
12033216301nitrite-reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistant
6837348923erythromycinyesyes14 µg
68373100147nalidixic acidyesyes84 µg
1203320129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesnoyes

metabolite production

@refChebi-IDmetaboliteproduction
12033235581indoleno
6837316136hydrogen sulfideno

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4
68382valine arylamidase-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
120332oxidase+
120332gelatinase-
120332DNase-
120332catalase+1.11.1.6
120332gamma-glutamyltransferase-2.3.2.2
120332urease-3.5.1.5
68373urease-3.5.1.5
68382alpha-glucosidase+3.2.1.20
68382cystine arylamidase-3.4.11.3
68373L-aspartate arylamidase-3.4.11.21
68373esterase+

fatty acid profile

  • @reffatty acidpercentageECL
    65619C14:03.114
    65619C15:02.515
    65619C16:04116
    65619C17:03.617
    65619C18:01.318
    65619C14:0 3OH/C16:1 ISO I1.715.485
    65619C16:1 ω7c1.215.819
    65619C17:1 ω6c1.416.862
    65619C18:1 ω5c0.717.919
    65619C18:1 ω7c /12t/9t30.617.824
    65619C18:2 ω6,9c/C18:0 ANTE0.517.724
    65619C19:0 CYCLO ω8c12.518.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    65620C14:05.314
    65620C16:047.316
    65620C18:02.518
    65620C14:0 3OH/C16:1 ISO I2.315.485
    65620C16:1 ω7c0.815.819
    65620C18:1 ω7c /12t/9t22.817.824
    65620C18:2 ω6,9c/C18:0 ANTE0.517.724
    65620C19:0 CYCLO ω8c18.518.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120332-+++------++---+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
24628-+++-++/---+----------+
24628-+++-++/---+----------+
24628-+++-++/---+/--+--------+
24628-+++-+---+--+/--------+
24628-+++-+---+--+---+/----+
24628-+++-++--+----+/------+
65619-+++-+++-+-----------
24628-++-+/-+++-+--+/--+/----+/--+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120332---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
24628Diarrheic stool of child
67770Diarrheic stool of a child
120332Human, Child, diarrheic stoolBelgiumBELEurope1972

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human#Child

taxonmaps

  • @ref: 69479
  • File name: preview.99_13.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15775;96_10;97_10;98_12;99_13&stattab=map
  • Last taxonomy: Campylobacter jejuni
  • 16S sequence: LC382117
  • Sequence Identity:
  • Total samples: 46113
  • soil counts: 1150
  • aquatic counts: 2583
  • animal counts: 42043
  • plant counts: 337

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
246282Risk group (German classification)
1203322Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
24628Campylobacter jejuni subsp. jejuni strain ATCC 29428 16S ribosomal RNA (rrs) gene, partial sequenceDQ1741421341nuccore32022
67770Campylobacter jejuni subsp. jejuni JCM 2013 gene for 16S ribosomal RNA, partial sequenceLC3821171435nuccore32022

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter jejuni subsp. jejuni JCM 2013GCA_000614815contigncbi1236539
66792Campylobacter jejuni subsp. jejuni JCM 20131236539.3wgspatric1236539
66792Campylobacter jejuni jejuni JCM 20132609460084draftimg1236539

GC content

  • @ref: 67770
  • GC-content: 30.2

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno97.977no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no81.85no
125438spore-formingspore-formingAbility to form endo- or exosporesno93.885no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no84.486yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno90.067no
125438motile2+flagellatedAbility to perform flagellated movementyes62.897no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno99
125439BacteriaNetmotilityAbility to perform movementno63.9
125439BacteriaNetgram_stainReaction to gram-stainingnegative99.9
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe85.5

External links

@ref: 24628

culture collection no.: DSM 104743, ATCC 29428, NCTC 11322, WDCM 00156, CCM 7212, CCUG 39973, CCUG 41359, CIP 103778, JCM 2013, VPI H840, BCRC 17705, CECT 8119

straininfo link

  • @ref: 91128
  • straininfo: 39521

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism2168804Catalase activity in Campylobacter jejuni: comparison of a wild-type strain with an aerotolerant variant.Vercellone PA, Smibert RM, Krieg NRCan J Microbiol10.1139/m90-0781990Campylobacter fetus/drug effects/*enzymology, Catalase/*metabolism, Drug Resistance, Microbial, Hydrogen Peroxide/pharmacology, Oxygen/*metabolism, Peroxidase/metabolism, Superoxide Dismutase/metabolism, Time FactorsEnzymology
Cultivation2422149A comparative study of the rod and coccoid forms of Campylobacter jejuni ATCC 29428.Moran AP, Upton MEJ Appl Bacteriol10.1111/j.1365-2672.1986.tb03366.x1986Campylobacter fetus/analysis/*cytology/genetics/physiology, Centrifugation, Culture Media, DNA, Bacterial/analysis, Edetic Acid, Muramidase, RNA, Bacterial/analysis
Cultivation3214811Effect of incubation temperature, ageing, and bisulfite content of unsupplemented Brucella agar on aerotolerance of Campylobacter jejuni.Lee MH, Smibert RM, Krieg NRCan J Microbiol10.1139/m88-1881988Aerobiosis, Campylobacter fetus/*growth & development, Colony Count, Microbial, Culture Media, Sulfites/*pharmacology, Temperature, Time Factors
Cultivation3571033Effect of medium supplements, illumination and superoxide dismutase on the production of coccoid forms of Campylobacter jejuni ATCC 29428.Moran AP, Upton MEJ Appl Bacteriol10.1111/j.1365-2672.1987.tb02379.x1987Campylobacter fetus/*cytology/growth & development, Culture Media, Hydrogen Peroxide/pharmacology, Light, Superoxide Dismutase/*pharmacologyBiotechnology
Phylogeny7790451Identification of Campylobacter jejuni on the basis of a species-specific gene that encodes a membrane protein.Stucki U, Frey J, Nicolet J, Burnens APJ Clin Microbiol10.1128/jcm.33.4.855-859.19951995Amino Acid Sequence, Animals, Antigens, Bacterial/genetics, Bacterial Proteins/genetics/immunology, Base Sequence, Campylobacter coli/classification/genetics/isolation & purification, Campylobacter jejuni/classification/*genetics/isolation & purification, Cloning, Molecular, DNA, Bacterial/genetics, Escherichia coli/genetics, *Genes, Bacterial, Humans, Membrane Proteins/*genetics/immunology, Molecular Sequence Data, Open Reading Frames, Polymerase Chain Reaction, Rabbits, Recombinant Proteins/genetics/immunology, Restriction Mapping, Serotyping, Species SpecificityEnzymology
Phylogeny8140332[Isolation of Campylobacter jejuni ATCC 29428 from inoculated fried pork meat and roasted chicken].Castillo-Martinez ML, Sanchez-Sanchez S, Rodriguez-Montano R, Quinones-Ramirez EI, Lugo de la Fuente G, Vazquez-Salinas CRev Latinoam Microbiol1993Animals, Campylobacter jejuni/growth & development/*isolation & purification, Chickens, Colony Count, Microbial, Cooking, *Culture Media, *Food Microbiology, Meat/*microbiology, SwineCultivation
Enzymology8576327Identification and characterization of an immunogenic outer membrane protein of Campylobacter jejuni.Burnens A, Stucki U, Nicolet J, Frey JJ Clin Microbiol10.1128/jcm.33.11.2826-2832.19951995Amino Acid Sequence, Animals, Antigens, Bacterial/*genetics, Bacterial Outer Membrane Proteins/*genetics/*immunology, Base Sequence, Blotting, Southern, Campylobacter Infections/microbiology, Campylobacter jejuni/*genetics/*immunology, Cats, Cattle, Cell Compartmentation, Cloning, Molecular, Dogs, Escherichia coli/genetics, Escherichia coli Proteins, Haemophilus Vaccines/genetics, Humans, Immunoblotting, Lipoproteins/genetics, Molecular Sequence Data, Peptidoglycan/genetics, Protein Sorting Signals/genetics, *Proteoglycans, Recombinant Proteins, Sequence Analysis, DNA, Species SpecificityPathogenicity
Cultivation9569699A blood-free enrichment medium for growing Campylobacter spp. under aerobic conditions.Tran TTLett Appl Microbiol10.1046/j.1472-765x.1998.00295.x1998Aerobiosis, Campylobacter/*growth & development, Culture Media, Serum-Free
Phylogeny9780736[RAPD typing of Campylobacter jejuni and comparison with Lior's or Penner's serotyping system].Ono K, Yamamoto K, Niwa ANihon Saikingaku Zasshi10.3412/jsb.53.5191998Animals, *Bacterial Typing Techniques, Campylobacter Infections/epidemiology/microbiology, Campylobacter jejuni/*classification/isolation & purification, Chickens, Disease Outbreaks, Foodborne Diseases/epidemiology/microbiology, Humans, Japan/epidemiology, Poultry Products/microbiology, *Random Amplified Polymorphic DNA Technique, SerotypingPathogenicity
Pathogenicity12708820Immunological characterization of the Campylobacter jejuni 72Dz/92 cjaD gene product and its fusion with B subunit of E. coli LT toxin.Wyszyznska A, Pawelec DP, Jagusztyn-Krynicka EKActa Microbiol Pol2002ATP-Binding Cassette Transporters/genetics/*immunology, Animals, Bacterial Proteins/*immunology, Bacterial Toxins/*immunology, Campylobacter jejuni, Cloning, Molecular, Enterotoxins/*immunology, *Escherichia coli Proteins, Immunity, Mucosal, Rabbits, Recombinant Fusion Proteins/*immunologyEnzymology
Enzymology15649010Phenotypic characterisation of flagellin and flagella of urease-positive thermophilic campylobacters.Sekizuka T, Seki K, Hayakawa T, Moore JE, Murayama O, Matsuda MBr J Biomed Sci10.1080/09674845.2004.117326692004Campylobacter/*chemistry/enzymology/ultrastructure, Campylobacter coli/chemistry/enzymology/ultrastructure, Campylobacter jejuni/chemistry/enzymology/ultrastructure, *Flagella, Flagellin/*analysis, Microscopy, Electron/methods, Molecular Sequence Data, Phenotype, Urease/metabolismGenetics
Cultivation19646049Validation of an improved method for detection of Campylobacter jejuni in foods.Odongo R, Reilly SS, Gilliland SEJ Food Sci10.1111/j.1750-3841.2009.01153.x2009Animals, Bacteriological Techniques/methods, Campylobacter jejuni/growth & development/*isolation & purification, Cattle, Chickens, Colony Count, Microbial/methods, Culture Media, Food Analysis/methods, Food Microbiology, Horses/blood, Meat/*microbiology, Skin/microbiology, Temperature, Time Factors, United States, United States Food and Drug AdministrationBiotechnology
Metabolism24650731Identification of a protein glycosylation operon from Campylobacter jejuni JCM 2013 and its heterologous expression in Escherichia coli.Srichaisupakit A, Ohashi T, Fujiyama KJ Biosci Bioeng10.1016/j.jbiosc.2014.02.0112014Acetylglucosamine/chemistry/metabolism, Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics/metabolism, Base Sequence, Campylobacter jejuni/*genetics/metabolism, Carbohydrate Sequence, Escherichia coli/*genetics/metabolism, *Gene Expression Regulation, Bacterial, Glycosylation, Humans, Molecular Sequence Data, Open Reading Frames, *Operon, Recombinant Proteins/chemistry/genetics/metabolism, Transcription, GeneticPathogenicity
30934514Survival of Campylobacter jejuni at Different Temperatures in Broth, Beef, Chicken and Cod Supplemented with Sodium Chloride.Abram DD, Potter NNJ Food Prot10.4315/0362-028X-47.10.7951984
Pathogenicity34437917S-layer protein 2 of vaginal Lactobacillus crispatus 2029 enhances growth, differentiation, VEGF production and barrier functions in intestinal epithelial cell line Caco-2.Abramov VM, Kosarev IV, Priputnevich TV, Machulin AV, Abashina TN, Chikileva IO, Donetskova AD, Takada K, Melnikov VG, Vasilenko RN, Khlebnikov VS, Samoilenko VA, Nikonov IN, Sukhikh GT, Uversky VN, Karlyshev AVInt J Biol Macromol10.1016/j.ijbiomac.2021.08.1502021Alkaline Phosphatase/genetics/metabolism, Bacterial Adhesion/drug effects, Caco-2 Cells, *Cell Differentiation/drug effects, Cell Membrane Permeability/drug effects, Cell Proliferation/drug effects, Electric Impedance, Enterocytes/drug effects/*metabolism, Female, Gene Expression Regulation, Enzymologic/drug effects, Humans, Lactase/genetics/metabolism, Lactobacillus crispatus/*chemistry, Membrane Glycoproteins/*pharmacology, RNA, Messenger/genetics/metabolism, Sucrase/genetics/metabolism, Vagina/*microbiology, Vascular Endothelial Growth Factor A/*biosynthesisMetabolism
35358626Role of temperature, nutrition, oxygen, osmolality, and bacterial strain in inducing a viable but non-culturable state in Campylobacter jejuni.Yagi S, Okada A, Inoshima YJ Microbiol Methods10.1016/j.mimet.2022.1064562022*Campylobacter jejuni, Osmolar Concentration, Oxygen, Temperature

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24628Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104743Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104743)
65619Curators of the CCUGhttps://www.ccug.se/strain?id=39973Culture Collection University of Gothenburg (CCUG) (CCUG 39973)
65620Curators of the CCUGhttps://www.ccug.se/strain?id=41359Culture Collection University of Gothenburg (CCUG) (CCUG 41359)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91128Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID39521.1
120332Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103778Collection of Institut Pasteur (CIP 103778)
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG

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