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BacDive ID 132948
Type strain
Strain Designation L6M1-5
Culture col. no. DSM 104732 JCM 30230 MCCC 1A07531 L6M1-5
NCBI tax ID(s) 561184
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.3 (current version):
version 9.3 (current version)

General

@ref: 24736

BacDive-ID: 132948

DSM-Number: 104732

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Mameliella alba L6M1-5 is a mesophilic, Gram-negative bacterium that was isolated from Deep-sea sediment.

NCBI tax id

  • NCBI tax id: 561184
  • Matching level: species

strain history

@refhistory
24736<- JCM <- H. Xu, Key Lab. Marine Biogenetic Resources, Third Institute of Oceanography, Xiamen, China; L6M1-5
67770H. Xu; Key Lab. of Mar. Biogenet. Resour., State Oceanic Admin., China; L6M1-5.

doi: 10.13145/bacdive132948.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Mameliella
  • species: Mameliella alba
  • full scientific name: Mameliella alba Zheng et al. 2010

  • synonyms

    @refsynonym
    20215Mameliella phaeodactyli
    20215Mameliella atlantica
    20215Ponticoccus lacteus
    20215Alkalimicrobium pacificum

@ref: 24736

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Mameliella

species: Mameliella alba

full scientific name: Mameliella alba Zheng et al. 2010 emend. Liu et al. 2018

strain designation: L6M1-5

type strain: no

Morphology

cell morphology

@refgram stainconfidence
125439negative97.2
125438negative99

Culture and growth conditions

culture medium

  • @ref: 24736
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperature
24736positivegrowth30
67770positivegrowth30

Physiology and metabolism

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 97.4

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369cytochrome oxidase+1.9.3.1
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
24736+----+--++++-++-+++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationlatitudelongitude
24736Deep-sea sedimentSouth Atlantic Ocean; depth 2835 m; site DY22IV-S1-TVG2-15.0167-13.1333
67770Deep-sea sediment collected from the South Atlantic Ocean

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_4629.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2304;97_2798;98_3475;99_4629&stattab=map
  • Last taxonomy: Mameliella alba subclade
  • 16S sequence: KJ950370
  • Sequence Identity:
  • Total samples: 4750
  • soil counts: 225
  • aquatic counts: 3972
  • animal counts: 519
  • plant counts: 34

Safety information

risk assessment

  • @ref: 24736
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24736
  • description: Mameliella alba strain MCCC 1A07531 16S ribosomal RNA gene, partial sequence
  • accession: KJ950370
  • length: 1341
  • database: nuccore
  • NCBI tax ID: 561184

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mameliella alba L6M1-5GCA_002211215contigncbi561184
66792Mameliella alba strain DSM 104732561184.13wgspatric561184
66792Mameliella alba L6M1-52791354927draftimg561184
66792Mameliella atlantica DSM 1047322830016464draftimg561184

GC content

@refGC-contentmethod
2473666.0
6777066high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno99no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no93.482no
125438spore-formingspore-formingAbility to form endo- or exosporesno86.276no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno99.497yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes82.305no
125438motile2+flagellatedAbility to perform flagellated movementyes65.442no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno97.4
125439BacteriaNetmotilityAbility to perform movementyes74.2
125439BacteriaNetgram_stainReaction to gram-stainingnegative97.2
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe76.5

External links

@ref: 24736

culture collection no.: DSM 104732, JCM 30230, MCCC 1A07531

straininfo link

  • @ref: 91225
  • straininfo: 407682

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25866025Mameliella atlantica sp. nov., a marine bacterium of the Roseobacter clade isolated from deep-sea sediment of the South Atlantic Ocean.Xu H, Jiang L, Li S, Zeng X, Shao ZInt J Syst Evol Microbiol10.1099/ijs.0.0002482015Atlantic Ocean, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny29488862Reclassification of Mameliella phaeodactyli, Mameliella atlantica, Ponticoccus lacteus and Alkalimicrobium pacificum as later heterotypic synonyms of Mameliella alba and an emended description of Mameliella alba.Liu Y, Zhang X, Lai Q, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0026172018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24736Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104732Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104732)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91225Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407682.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG

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