@ref: 29422
BacDive-ID: 133542
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, rod-shaped
description: Prevotella aurantiaca OMA31 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from human - mouth.
| NCBI tax id | Matching level |
|---|---|
| 1236508 | strain |
| 596085 | species |
doi: 10.13145/bacdive133542.20250331.9.3
@ref: 29422
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Prevotellaceae
genus: Prevotella
species: Prevotella aurantiaca
strain designation: OMA31
type strain: yes
| @ref | cell length | cell width | cell shape | motility | gram stain | confidence |
|---|---|---|---|---|---|---|
| 29422 | 1.6 µm | 0.65 µm | rod-shaped | no | ||
| 125438 | negative | 95.163 | ||||
| 125439 | negative | 99.7 |
| @ref | growth | type | temperature |
|---|---|---|---|
| 29422 | positive | growth | 37 |
| 61429 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 29422 | anaerobe | |
| 61429 | anaerobe | |
| 125438 | anaerobe | 93.039 |
| @ref | spore formation | confidence |
|---|---|---|
| 29422 | no | |
| 125438 | no | 91.356 |
| 125439 | no | 99.3 |
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29422 | 17234 | glucose | + | carbon source |
| 29422 | 17306 | maltose | + | carbon source |
| 29422 | 37684 | mannose | + | carbon source |
| 29422 | 16634 | raffinose | + | carbon source |
| 29422 | 17992 | sucrose | + | carbon source |
| @ref | value | activity | ec |
|---|---|---|---|
| 29422 | alkaline phosphatase | + | 3.1.3.1 |
| 29422 | gelatinase | + |
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 29422 | human - mouth | |||
| 61429 | Periodontal pocket,periodontitis | Japan | JPN | Asia |
| 67770 | Human oral cavity |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Mouth |
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Prevotella aurantiaca JCM 15754 | 1236508.3 | wgs | patric | 1236508 |
| 66792 | Prevotella aurantiaca JCM 15754 | 2565956594 | draft | img | 1236508 |
| 67770 | Prevotella aurantiaca JCM 15754 | GCA_000614025 | contig | ncbi | 1236508 |
| @ref | GC-content | method |
|---|---|---|
| 29422 | 39.7 | |
| 67770 | 39.7 | high performance liquid chromatography (HPLC) |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 95.163 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 93.039 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.356 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 97.341 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.234 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 89.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.3 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 77.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.7 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 78.8 |
@ref: 29422
culture collection no.: JCM 15754, CCUG 57723, KCTC 15073
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19654360 | Prevotella aurantiaca sp. nov., isolated from the human oral cavity. | Sakamoto M, Suzuki N, Okamoto M | Int J Syst Evol Microbiol | 10.1099/ijs.0.012831-0 | 2009 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Humans, Molecular Sequence Data, Mouth/*microbiology, Periodontitis/microbiology, Phylogeny, Prevotella/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics | Metabolism |
| Pathogenicity | 28821458 | Dipeptidyl peptidase IV and quorum sensing signaling in biofilm-related virulence of Prevotella aurantiaca. | Fteita D, Musrati AA, Kononen E, Ma X, Gursoy M, Peurla M, Soderling E, Sintim HO, Gursoy UK | Anaerobe | 10.1016/j.anaerobe.2017.08.009 | 2017 | Bacteroidaceae Infections/*microbiology, Biofilms/drug effects/*growth & development, Dipeptidyl Peptidase 4/*metabolism, Enzyme Activation, Estradiol/pharmacology, Humans, Microbial Viability/drug effects, Prevotella/pathogenicity/*physiology/ultrastructure, *Quorum Sensing, *Signal Transduction, Virulence, Virulence Factors | Metabolism |
| @id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 29422 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25828 | 28776041 | |
| 61429 | Curators of the CCUG | https://www.ccug.se/strain?id=57723 | Culture Collection University of Gothenburg (CCUG) (CCUG 57723) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 91495 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID411214.1 | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |
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