@ref: 29902
BacDive-ID: 133643
keywords: genome sequence, 16S sequence, aerobe, Gram-negative, rod-shaped
description: Altericroceibacterium xinjiangense S3-63 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from Environment, Soil, sand sample.
doi: 10.13145/bacdive133643.20251217.10
@ref: 29902
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Erythrobacteraceae
genus: Altererythrobacter
species: Altererythrobacter xinjiangensis
strain designation: S3-63
type strain: yes
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 29902 | negative | 1.3-1.6 µm | 1.1-1.2 µm | rod-shaped | no | |
| 125439 | negative | 99.3 | ||||
| 125438 | negative | 94.833 | ||||
| 123981 | negative | oval-shaped | no |
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 42197 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
| 123981 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
| @ref | growth | type | temperature |
|---|---|---|---|
| 29902 | positive | growth | 20-37 |
| 29902 | positive | optimum | 30 |
| 42197 | positive | growth | 30 |
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29902 | positive | growth | 07-09 | alkaliphile |
| 29902 | positive | optimum | 8 |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 29902 | aerobe | |
| 125439 | obligate aerobe | 98.3 |
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29902 | NaCl | positive | growth | 0-3 % |
| 29902 | NaCl | positive | optimum | 1 % |
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29902 | 30089 | acetate | + | carbon source |
| 29902 | 22653 | asparagine | + | carbon source |
| 29902 | 23652 | dextrin | + | carbon source |
| 29902 | 28757 | fructose | + | carbon source |
| 29902 | 28087 | glycogen | + | carbon source |
| 29902 | 18257 | ornithine | + | carbon source |
| 29902 | 51850 | methyl pyruvate | + | carbon source |
| 29902 | 16634 | raffinose | + | carbon source |
| 29902 | 53423 | tween 40 | + | carbon source |
| 123981 | 17632 | nitrate | + | reduction |
| 123981 | 16301 | nitrite | + | reduction |
| @ref | value | activity | ec |
|---|---|---|---|
| 29902 | acid phosphatase | + | 3.1.3.2 |
| 29902 | alkaline phosphatase | + | 3.1.3.1 |
| 29902 | catalase | + | 1.11.1.6 |
| 68382 | alkaline phosphatase | + | 3.1.3.1 |
| 68382 | esterase (C 4) | + | |
| 68382 | esterase lipase (C 8) | + | |
| 68382 | lipase (C 14) | - | |
| 68382 | leucine arylamidase | + | 3.4.11.1 |
| 68382 | valine arylamidase | + | |
| 68382 | cystine arylamidase | - | 3.4.11.3 |
| 68382 | trypsin | - | 3.4.21.4 |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 |
| 68382 | acid phosphatase | + | 3.1.3.2 |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | |
| 68382 | alpha-galactosidase | - | 3.2.1.22 |
| 68382 | beta-galactosidase | + | 3.2.1.23 |
| 68382 | beta-glucuronidase | - | 3.2.1.31 |
| 68382 | alpha-glucosidase | + | 3.2.1.20 |
| 68382 | beta-glucosidase | + | 3.2.1.21 |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68382 | alpha-mannosidase | - | 3.2.1.24 |
| 68382 | alpha-fucosidase | - | 3.2.1.51 |
| 123981 | oxidase | - | |
| 123981 | catalase | + | 1.11.1.6 |
| 123981 | urease | - | 3.5.1.5 |
| @ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123981 | - | + | + | + | - | + | + | - | - | + | + | + | - | + | - | + | + | - | - | - |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 94.833 | yes |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.232 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 79.869 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.204 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.941 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 57.49 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 97 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 54.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.3 |
@ref: 29902
culture collection no.: CCTCC AB 207166, CIP 110125
| @id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 29902 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26274 | 28776041 | |
| 42197 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7949 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 68382 | Automatically annotated from API zym | |||||
| 123981 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110125 | Collection of Institut Pasteur (CIP 110125) | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG | |||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | StrainInfo—the central database for linked microbial strain identifiers | 10.1093/database/baaf059 |
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