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BacDive ID 133695
Type strain
Strain Designation 7031
Culture col. no. AS 4.1808 JCM 11884 7031
NCBI tax ID(s) 113618
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 10 (current version):
version 10 (current version)

General

@ref: 30181

BacDive-ID: 133695

keywords: 16S sequence, aerobe, Gram-positive, rod-shaped

description: Nocardia pigrifrangens 7031 is an aerobe, Gram-positive, rod-shaped prokaryote that was isolated from contaminated agar plate.

NCBI tax id

  • NCBI tax id: 113618
  • Matching level: species

doi: 10.13145/bacdive133695.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/bacillati
  • keyword: phylum/actinomycetota
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia pigrifrangens
  • full scientific name: Nocardia pigrifrangens Wang et al. 2004

@ref: 30181

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Nocardia

species: Nocardia pigrifrangens

strain designation: 7031

type strain: yes

Morphology

cell morphology

  • @ref: 30181
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30181
  • production: yes

Culture and growth conditions

culture temp

  • @ref: 30181
  • growth: positive
  • type: growth
  • temperature: 18-35

Physiology and metabolism

oxygen tolerance

  • @ref: 30181
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
30181161933-hydroxybenzoate+carbon source
3018130089acetate+carbon source
3018122599arabinose+carbon source
3018117057cellobiose+carbon source
3018116236ethanol+carbon source
3018128757fructose+carbon source
3018124265gluconate+carbon source
3018117234glucose+carbon source
3018117754glycerol+carbon source
3018128087glycogen+carbon source
3018137684mannose+carbon source
3018115361pyruvate+carbon source
3018133942ribose+carbon source
3018117814salicin+carbon source
3018130031succinate+carbon source
3018117992sucrose+carbon source
3018127082trehalose+carbon source
3018118222xylose+carbon source
3018117632nitrate+reduction

enzymes

@refvalueactivityec
30181catalase+1.11.1.6
30181urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 30181
  • sample type: contaminated agar plate

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Engineered#Laboratory#Lab enrichment

Sequence information

16S sequences

  • @ref: 30181
  • description: Nocardia pigrifrangens strain 7031 16S ribosomal RNA gene, partial sequence
  • accession: AF219974
  • length: 1424
  • database: nuccore
  • NCBI tax ID: 113618

GC content

  • @ref: 30181
  • GC-content: 68.7

Literature

@ref: 30181

culture collection no.: AS 4.1808, JCM 11884

straininfo link

  • @ref: 126262
  • straininfo: 134300

literature

  • topic: Phylogeny
  • Pubmed-ID: 15388728
  • title: Nocardia pigrifrangens sp. nov., a novel actinomycete isolated from a contaminated agar plate.
  • authors: Wang L, Zhang Y, Huang Y, Maldonado LA, Liu Z, Goodfellow M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.03035-0
  • year: 2004
  • mesh: Bacterial Typing Techniques, *Culture Media, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Genes, rRNA, Molecular Sequence Data, Nocardia/chemistry/*classification/cytology/*isolation & purification, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30181Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172652928776041
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. ReimerStrainInfo—the central database for linked microbial strain identifiers10.1093/database/baaf059

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