@ref: 31055
BacDive-ID: 134012
keywords: genome sequence, 16S sequence, aerobe, Gram-negative
description: Halolamina salina GCMCC1.12285 is an aerobe, Gram-negative prokaryote that was isolated from salt mine.
doi: 10.13145/bacdive134012.20251217.10
@ref: 31055
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Haloferacales
family: Halorubraceae
genus: Halolamina
species: Halolamina salina
strain designation: GCMCC1.12285, WSY15-H3
type strain: yes
| @ref | growth | type | temperature |
|---|---|---|---|
| 31055 | positive | growth | 20-50 |
| 31055 | positive | optimum | 39.5 |
| 67770 | positive | growth | 37 |
| @ref | ability | type | pH |
|---|---|---|---|
| 31055 | positive | growth | 6.0-7.5 |
| 31055 | positive | optimum | 6.5 |
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31055 | NaCl | positive | growth | 11.02-31.32 % |
| 31055 | NaCl | positive | optimum | 19.72 % |
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31055 | 30089 | acetate | + | carbon source |
| 31055 | 29016 | arginine | + | carbon source |
| 31055 | 28260 | galactose | + | carbon source |
| 31055 | 17234 | glucose | + | carbon source |
| 31055 | 29987 | glutamate | + | carbon source |
| 31055 | 15361 | pyruvate | + | carbon source |
| 31055 | 33942 | ribose | + | carbon source |
| 31055 | 17992 | sucrose | + | carbon source |
| 31055 | 4853 | esculin | + | hydrolysis |
| @ref | value | activity | ec |
|---|---|---|---|
| 31055 | acid phosphatase | + | 3.1.3.2 |
| 31055 | catalase | + | 1.11.1.6 |
| 31055 | cytochrome oxidase | + | 1.9.3.1 |
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 31055 | salt mine | ||||
| 67770 | Salt mine in Wensu county | Xinjiang | China | CHN | Asia |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Other | #Mine |
| #Condition | #Saline |
| @ref | description | assembly level | INSDC accession | NCBI tax ID |
|---|---|---|---|---|
| 124043 | ASM4266226v1 assembly for Halolamina salina CGMCC 1.12285 | scaffold | GCA_042662265 | 1220023 |
| 124043 | ASM4267800v1 assembly for Halolamina salina CGMCC 1.12285 | scaffold | GCA_042678005 | 1220023 |
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 31055 | Halolamina salina strain WSY15-H3 16S ribosomal RNA gene, partial sequence | JX192605 | 1472 | nuccore | 1220023 |
| 124043 | Halolamina salina gene for 16S ribosomal RNA, partial sequence, strain: JCM 18549. | AB935418 | 1473 | nuccore | 1220023 |
| @ref | GC-content | method |
|---|---|---|
| 31055 | 66.2 | |
| 67770 | 66.2 | high performance liquid chromatography (HPLC) |
@ref: 31055
culture collection no.: JCM 18549, CGMCC 1.12285
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23832972 | Halolamina salifodinae sp. nov. and Halolamina salina sp. nov., two extremely halophilic archaea isolated from a salt mine. | Zhang WY, Huo YY, Zhang XQ, Zhu XF, Wu M | Int J Syst Evol Microbiol | 10.1099/ijs.0.050864-0 | 2013 | Base Composition, China, DNA, Archaeal/genetics, Glycolipids/chemistry, Halobacteriaceae/*classification/genetics/isolation & purification, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride | Genetics |
| Phylogeny | 24633912 | Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt. | Cha IT, Yim KJ, Song HS, Lee HW, Hyun DW, Kim KN, Choi JS, Kim D, Lee SJ, Seo MJ, Choi HJ, Bae JW, Rhee SK, Roh SW, Nam YD | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0145-0 | 2014 | Base Composition, Cluster Analysis, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Glycolipids/analysis, Halobacteriaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Salts/*metabolism, Sequence Analysis, DNA | Genetics |
| Phylogeny | 25920722 | Halolamina sediminis sp. nov., an extremely halophilic archaeon isolated from solar salt. | Koh HW, Song HS, Song U, Yim KJ, Roh SW, Park SJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.000287 | 2015 | Base Composition, DNA, Archaeal/genetics, Glycolipids/chemistry, Halobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Salts, Sequence Analysis, DNA, *Sodium Chloride | Genetics |
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31055 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27385 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | |||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | StrainInfo—the central database for linked microbial strain identifiers | 10.1093/database/baaf059 |
License