@ref: 32559
BacDive-ID: 134346
keywords: genome sequence, 16S sequence, aerobe, psychrophilic, Gram-negative, motile, rod-shaped
description: Marinobacter psychrophilus 20041 is an aerobe, psychrophilic, Gram-negative prokaryote that was isolated from seawater.
doi: 10.13145/bacdive134346.20251217.10
@ref: 32559
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter psychrophilus
strain designation: 20041
type strain: yes
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 32559 | negative | 1.75 µm | 0.35 µm | rod-shaped | yes | |
| 125438 | negative | 99.5 | ||||
| 125439 | negative | 99.2 |
| @ref | growth | type | temperature |
|---|---|---|---|
| 32559 | positive | growth | 0-22 |
| 32559 | positive | optimum | 17 |
| 67770 | positive | growth | 18 |
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32559 | positive | growth | 05-10 | alkaliphile |
| 32559 | positive | optimum | 7.5 |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 32559 | aerobe | |
| 125439 | obligate aerobe | 97.2 |
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32559 | 22599 | arabinose | + | carbon source |
| 32559 | 17754 | glycerol | + | carbon source |
| 32559 | 17822 | serine | + | carbon source |
| 32559 | 17992 | sucrose | + | carbon source |
| 32559 | 17632 | nitrate | + | reduction |
| @ref | value | activity | ec |
|---|---|---|---|
| 32559 | alkaline phosphatase | + | 3.1.3.1 |
| 32559 | catalase | + | 1.11.1.6 |
| 32559 | cytochrome oxidase | + | 1.9.3.1 |
| @ref | sample type | latitude | longitude |
|---|---|---|---|
| 32559 | seawater | ||
| 67770 | Sea-ice samples collected off the Canadian Basin of the Arctic Ocean (78° 23' 14" N 149° 06' 55" W) | 78.3872 | -149.115 |
| @ref | GC-content | method |
|---|---|---|
| 32559 | 55.4 | |
| 67770 | 55.4 | thermal denaturation, midpoint method (Tm) |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.5 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.781 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 84.347 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.623 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.824 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 85.733 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 84.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.2 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 97.2 |
@ref: 32559
culture collection no.: CGMCC 1.6499, JCM 14643, BCRC 80070
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18523195 | Marinobacter psychrophilus sp. nov., a psychrophilic bacterium isolated from the Arctic. | Zhang DC, Li HR, Xin YH, Chi ZM, Zhou PJ, Yu Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.65690-0 | 2008 | Arctic Regions, Bacterial Typing Techniques, Base Composition, *Cold Temperature, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Ice Cover/*microbiology, Marinobacter/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
| Phylogeny | 26908308 | Complete genome of Marinobacter psychrophilus strain 20041(T) isolated from sea-ice of the Canadian Basin. | Song L, Ren L, Wang L, Yu Y, Wang X, Liu G | Mar Genomics | 10.1016/j.margen.2016.02.001 | 2016 | Arctic Regions, Canada, *Genome, Bacterial, Ice Cover/*microbiology, Marinobacter/classification/*genetics, Phylogeny, Sequence Analysis, DNA | Genetics |
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32559 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28777 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | ||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG | ||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | StrainInfo—the central database for linked microbial strain identifiers | 10.1093/database/baaf059 |
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