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BacDive ID 134440
Type strain
Culture col. no. CIP 105558 CCUG 20703 LMG 8532
NCBI tax ID(s) 206
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 10 (current version):
version 10 (current version)

General

@ref: 32758

BacDive-ID: 134440

keywords: genome sequence, mesophilic, Gram-negative, motile, rod-shaped

description: Campylobacter sputorum CIP 105558 is a mesophilic, Gram-negative, motile prokaryote of the family Campylobacteraceae.

NCBI tax id

  • NCBI tax id: 206
  • Matching level: species

strain history

  • @ref: 32758
  • history: CIP <- 1998, CCUG <- 1987, F.J. Bolton, PHL, Preston, UK: strain Bolton A3, Campylobacter fecalis

doi: 10.13145/bacdive134440.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/pseudomonadati
  • keyword: phylum/pseudomonadota
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter sputorum
  • full scientific name: Campylobacter sputorum (Prévot 1940) Véron and Chatelain 1973 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Vibrio sputorum

@ref: 32758

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter sputorum

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125438negative98.462
125439negative97.2
32758negativerod-shapedyes

colony morphology

  • @ref: 32758

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
32758MEDIUM 262 - Columbia agar with 30 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (300.000 ml)
32758Brucella brothyes
32758CIP Medium 262yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=262

culture temp

@refgrowthtypetemperature
32758positivegrowth37
32758positivegrowth25-41
32758negativegrowth5
32758negativegrowth10
32758negativegrowth45

Physiology and metabolism

spore formation

@refspore formationconfidence
125438no94.92
125439no97.3

halophily

  • @ref: 32758
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316199urea-hydrolysis
6837317632nitrate+reduction
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride+reduction
6837330031succinate+assimilation
6837330089acetate+assimilation
6837317272propionate-assimilation
6837325115malate+assimilation
6837316947citrate-assimilation
32758606565hippurate-hydrolysis
3275817632nitrate+reduction
3275816301nitrite+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
68373474053cefazolinyesyes224 µg
6837348923erythromycinyesyes14 µg
68373100147nalidixic acidyesyes84 µg
327580129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesnoyes

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideyes
3275835581indoleno

enzymes

@refvalueactivityec
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51
32758oxidase+
32758gelatinase-
32758catalase+1.11.1.6
32758gamma-glutamyltransferase-2.3.2.2
32758urease-3.5.1.5
68373alkaline phosphatase-3.1.3.1
68373esterase-
68373catalase+1.11.1.6
68373L-aspartate arylamidase+3.4.11.21
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
32758-+++-+----++---+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
47194-+---+--+-+-++-+-+--+
47194-+---+-++-++++-+-+--+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
32758PrestonUnited KingdomGBREurope
47194PrestonUnited KingdomGBREuropeBovine feces
32758PrestonUnited KingdomGBREuropeAnimal, Bovine feces

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Interaction and safety

risk assessment

  • @ref: 32758
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: ASM222073v1 assembly for Campylobacter sputorum bv. faecalis CCUG 20703
  • assembly level: complete
  • INSDC accession: GCA_002220735
  • BV-BRC accession: 1031920.3
  • NCBI tax ID: 1031920
  • score: 96.67

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthaerobe69
125439BacteriaNetgram_stainReaction to gram-stainingnegative97.2
125439BacteriaNetmotilityAbility to perform movementno55
125439BacteriaNetspore_formationAbility to form endo- or exosporesno97.3
125438gram-positivegram-positivePositive reaction to Gram-stainingno98.462no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no63.73no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no90.735no
125438spore-formingspore-formingAbility to form endo- or exosporesno94.92no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno89.063no
125438motile2+flagellatedAbility to perform flagellated movementyes64.219no

Literature

@ref: 32758

culture collection no.: CIP 105558, CCUG 20703, LMG 8532

straininfo link

  • @ref: 126262
  • straininfo: 13604

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology15066825Direct quantification of Campylobacter jejuni and Campylobacter lanienae in feces of cattle by real-time quantitative PCR.Inglis GD, Kalischuk LD.Appl Environ Microbiol10.1128/aem.70.4.2296-2306.20042004microbiology, microbiology, genetics, isolation & purification, genetics, isolation & purificationPhylogeny
Phylogeny16204551Speciation of Campylobacter coli, C. jejuni, C. helveticus, C. lari, C. sputorum, and C. upsaliensis by matrix-assisted laser desorption ionization-time of flight mass spectrometry.Mandrell RE, Harden LA, Bates A, Miller WG, Haddon WF, Fagerquist CK.Appl Environ Microbiol10.1128/aem.71.10.6292-6307.20052005classification, methods, Bacterial Typing Techniques
Phylogeny22919636Multilocus sequence typing methods for the emerging Campylobacter Species C. hyointestinalis, C. lanienae, C. sputorum, C. concisus, and C. curvus.Miller WG, Chapman MH, Yee E, On SL, McNulty DK, Lastovica AJ, Carroll AM, McNamara EB, Duffy G, Mandrell RE.Front Cell Infect Microbiol10.3389/fcimb.2012.000452012Emerging, Mlst, Campylobacter Concisus, Campylobacter Hyointestinalis, Campylobacter Lanienae, Campylobacter Curvus, Campylobacter Sputorum, classification, genetics, methods
Enzymology24498018Biological roles of the O-methyl phosphoramidate capsule modification in Campylobacter jejuni.van Alphen LB, Wenzel CQ, Richards MR, Fodor C, Ashmus RA, Stahl M, Karlyshev AV, Wren BW, Stintzi A, Miller WG, Lowary TL, Szymanski CM.PLoS One10.1371/journal.pone.00870512014enzymology, metabolism, metabolism, physiology, enzymologyMetabolism
Genetics28633450Comparative Genomics of All Three Campylobacter sputorum Biovars and a Novel Cattle-Associated C. sputorum Clade.Miller WG, Yee E, Chapman MH, Bono JL.Genome Biol Evol10.1093/gbe/evx1122017Comparative genomics, Campylobacter Sputorum, Fecalis, Paraureolyticus, Sputorum, microbiology, genetics, isolation & purificationEnzymology
37761759Investigating the Significance of Non-jejuni/coli Campylobacter Strains in Patients with Diarrhea.Teksoy N, Ilktac M, Ilktac M, Ongen B.Healthcare (Basel)10.3390/healthcare111825622023Multiplex PCR, Gastroenteritis, Campylobacter Spp., C. Concisus, Non-jejuni/coli
Phylogeny39535936Campylobacter sputorum subsp. bovis subsp. nov., isolated from cattle, and an emended description of Campylobacter sputorum.Miller WG, Williams TG, Wood DF, Chapman MH.Int J Syst Evol Microbiol10.1099/ijsem.0.0065712024Cattle, California, Campylobacter Sputorum, Novel Subspecies, Feces, Campylobacter, DNA, Bacterial, RNA, Ribosomal, 16S, Bacterial Typing Techniques, Nucleic Acid Hybridization, Sequence Analysis, DNA, PhylogenyTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32758Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105558Collection of Institut Pasteur (CIP 105558)
47194Curators of the CCUGhttps://www.ccug.se/strain?id=20703Culture Collection University of Gothenburg (CCUG) (CCUG 20703)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. ReimerStrainInfo—the central database for linked microbial strain identifiers10.1093/database/baaf059

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