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BacDive ID 134482
Type strain
Culture col. no. CIP 106519 ATCC 15957 CCRC 11055 CCTM La 2974 CECT 4093 NCIMB 12874 1 more
NCBI tax ID(s) 72000
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 10 (current version):
version 10 (current version)

General

@ref: 32831

BacDive-ID: 134482

keywords: facultative anaerobe, mesophilic, Gram-positive, coccus-shaped

description: Kocuria rhizophila CIP 106519 is a facultative anaerobe, mesophilic, Gram-positive prokaryote of the family Micrococcaceae.

NCBI tax id

  • NCBI tax id: 72000
  • Matching level: species

strain history

  • @ref: 32831
  • history: CIP <- 2000, CECT <- NCIMB <- ATCC <- FDA ex derived from ATCC 10240 (CECT 245), Sarcina lutea

doi: 10.13145/bacdive134482.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/bacillati
  • keyword: phylum/actinomycetota
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Kocuria
  • species: Kocuria rhizophila
  • full scientific name: Kocuria rhizophila Kovács et al. 1999

@ref: 32831

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Kocuria

species: Kocuria rhizophila

type strain: no

Morphology

cell morphology

  • @ref: 32831
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 32831

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
32831MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
32831CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
32831positivegrowth37
32831positivegrowth22-41
32831negativegrowth10
32831negativegrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 32831
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
32831606565hippurate+hydrolysis
3283117632nitrate-reduction
3283116301nitrite-reduction
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837128066gentiobiose-builds acid from
6837132528turanose+builds acid from
6837117151xylitol-builds acid from
6837118305arbutin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837162345L-rhamnose-builds acid from
6837116813galactitol-builds acid from
6837116024D-mannose+builds acid from
6837112936D-galactose-builds acid from
6837117113erythritol-builds acid from
6837117108D-arabinose-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837162318D-lyxose-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837117266L-sorbose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117754glycerol-builds acid from

metabolite production

  • @ref: 32831
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 32831
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51
32831oxidase-
32831beta-galactosidase-3.2.1.23
32831alcohol dehydrogenase-1.1.1.1
32831gelatinase-
32831amylase+
32831DNase-
32831caseinase-3.4.21.50
32831catalase+1.11.1.6
32831coagulase-
32831tween esterase-
32831gamma-glutamyltransferase+2.3.2.2
32831lecithinase-
32831lipase-
32831lysine decarboxylase-4.1.1.18
32831ornithine decarboxylase-4.1.1.17
32831phenylalanine ammonia-lyase-4.3.1.24
32831protease-
32831urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
32831-+++++----++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
32831----------+++---------+/--------+-+/-------+-+/--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
32831++-+---+--+--------------------+---+-------------+---+------++---------+++-++++++--++-+-+-+++-+-++-

Interaction and safety

risk assessment

  • @ref: 32831
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Literature

@ref: 32831

culture collection no.: CIP 106519, ATCC 15957, CCRC 11055, CCTM La 2974, CECT 4093, NCIMB 12874

straininfo link

  • @ref: 126262
  • straininfo: 10528

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32831Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106519Collection of Institut Pasteur (CIP 106519)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. ReimerStrainInfo—the central database for linked microbial strain identifiers10.1093/database/baaf059

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