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BacDive ID 135931
Type strain
Strain Designation Y10 F-
Culture col. no. CIP 54.120 NCIMB 10085 Y10 F-
NCBI tax ID(s) 562
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 10 (current version):
version 10 (current version)

General

@ref: 35208

BacDive-ID: 135931

keywords: facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Escherichia coli Y10 F- is a facultative anaerobe, mesophilic, Gram-negative prokaryote of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 35208
  • history: CIP <- 1954, E. Wollman, Inst. Pasteur, Paris, France <- W. Hayes <- J. Lederberg: strain Y10 F-

doi: 10.13145/bacdive135931.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/pseudomonadati
  • keyword: phylum/pseudomonadota
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 35208

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

strain designation: Y10 F-

type strain: no

Morphology

cell morphology

  • @ref: 35208
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 35208
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35208MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
35208CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
35208positivegrowth30
35208positivegrowth30-41
35208negativegrowth5
35208negativegrowth10

Physiology and metabolism

oxygen tolerance

  • @ref: 35208
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3520829864mannitol+fermentation
3520816947citrate-carbon source
352084853esculin+hydrolysis
3520817234glucose+fermentation
3520817716lactose+fermentation
3520817632nitrate+reduction
3520816301nitrite-reduction
3520815792malonate-assimilation
35208132112sodium thiosulfate-builds gas from
3520817234glucose+degradation
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate+builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837165327D-xylose+builds acid from
6837165328L-xylose-builds acid from
6837130849L-arabinose+builds acid from
6837116988D-ribose+builds acid from
6837117108D-arabinose-builds acid from
6837117754glycerol+builds acid from
68371Potassium 5-ketogluconate+builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose+builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose-builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol+builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol-builds acid from
6837162345L-rhamnose+builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837117113erythritol-builds acid from

antibiotic resistance

  • @ref: 35208
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 35208
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3520815688acetoin-
3520817234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382leucine arylamidase+3.4.11.1
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
35208oxidase-
35208beta-galactosidase+3.2.1.23
35208alcohol dehydrogenase-1.1.1.1
35208gelatinase-
35208catalase+1.11.1.6
35208lysine decarboxylase+4.1.1.18
35208ornithine decarboxylase-4.1.1.17
35208phenylalanine ammonia-lyase-4.3.1.24
35208tryptophan deaminase-
35208urease-3.5.1.5
68382alpha-mannosidase-3.2.1.24
68382lipase (C 14)-
68382acid phosphatase+3.1.3.2
68382valine arylamidase-

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35208-+---+----+-++-+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
35208+--+++---++++-++/--++--++/-+/-+/-+/-+/-+++-+---+/--------+--+-+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
35208---------------------------------------------------------------------------------------------------

Interaction and safety

risk assessment

  • @ref: 35208
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Literature

@ref: 35208

culture collection no.: CIP 54.120, NCIMB 10085

straininfo link

  • @ref: 126262
  • straininfo: 59946

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35208Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2054.120Collection of Institut Pasteur (CIP 54.120)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. ReimerStrainInfo—the central database for linked microbial strain identifiers10.1093/database/baaf059

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