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BacDive ID 138210
Type strain
Strain Designation KA25
Culture col. no. CIP 105439 JCM 9340 IAM 14814 IFO 16436 NBRC 16436 KA25 1 more
NCBI tax ID(s) 43057
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.2 (current version):
version 9.2 (current version)

General

@ref: 39290

BacDive-ID: 138210

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Cereibacter azotoformans KA25 is a mesophilic, Gram-negative, motile bacterium that was isolated from Photosynthetic sludge.

NCBI tax id

  • NCBI tax id: 43057
  • Matching level: species

strain history

@refhistory
67770A. Hiraishi KA25.
39290CIP <- 1998, JCM <- A. Hiraishi: strain KA25

doi: 10.13145/bacdive138210.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Paracoccaceae
  • genus: Cereibacter
  • species: Cereibacter azotoformans
  • full scientific name: Cereibacter azotoformans (Hiraishi et al. 1997) Hördt et al. 2020

  • synonyms

    @refsynonym
    20215Luteovulum azotoformans
    20215Rhodobacter azotoformans

@ref: 39290

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Rhodobacter

species: Rhodobacter azotoformans

strain designation: KA25

type strain: yes

Morphology

cell morphology

  • @ref: 39290
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39290MEDIUM 283 - for Rhodobacter azotoformansyesDistilled water make up to (1000.000 ml);Sodium chloride (0.200 g);Magnesium chloride hexahydrate (0.200 g);Calcium chloride dihydrate (0.050 g);Agar (20.000 g);Yeast extract (1.000 g);Ammonium sulphate (1.000 g);Potassium di-hydrogen phosphate (1.000 g);
39290CIP Medium 283yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=283

culture temp

@refgrowthtypetemperature
39290positivegrowth28
67770positivegrowth28
39290positivegrowth15-37
39290nogrowth5
39290nogrowth41

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
39290NaClpositivegrowth0-4 %
39290NaClnogrowth6 %
39290NaClnogrowth8 %
39290NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
392904853esculin+hydrolysis
3929017632nitrate+reduction
3929016301nitrite+reduction
3929017234glucose+degradation
68371Potassium 5-ketogluconate-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol+builds acid from
6837118333D-arabitol+builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose+builds acid from
6837162318D-lyxose+builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol+builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117814salicin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose+builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

antibiotic resistance

  • @ref: 39290
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 39290
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3929015688acetoin-
3929017234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase-3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-galactosidase-3.2.1.23
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
39290oxidase-
39290alcohol dehydrogenase-1.1.1.1
39290gelatinase-
39290amylase-
39290DNase-
39290caseinase-3.4.21.50
39290catalase+1.11.1.6
39290tween esterase-
39290gamma-glutamyltransferase-2.3.2.2
39290lecithinase-
39290lipase-
39290lysine decarboxylase-4.1.1.18
39290ornithine decarboxylase-4.1.1.17
39290phenylalanine ammonia-lyase-4.3.1.24
39290tryptophan deaminase-
39290urease-3.5.1.5
68382alpha-galactosidase-3.2.1.22

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39290-+++-+-----+---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
39290--+/-+++---+/-+++----+------+/--+/-+/----------+--++--++---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
39290-----------+----+-----------------------------------------------------------------------+----------

Isolation, sampling and environmental information

isolation

@refsample type
67770Photosynthetic sludge
39290Environment, Photosynthetic sludge

taxonmaps

  • @ref: 69479
  • File name: preview.99_4870.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1024;97_1194;98_3646;99_4870&stattab=map
  • Last taxonomy: Luteovulum azotoformans subclade
  • 16S sequence: AB607332
  • Sequence Identity:
  • Total samples: 975
  • soil counts: 147
  • aquatic counts: 520
  • animal counts: 288
  • plant counts: 20

Safety information

risk assessment

  • @ref: 39290
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Rhodobacter azotoformans gene for 16S rRNA, partial sequenceAB6073321418nuccore43057
67770Rhodobacter azotoformans (strain KA25) gene for 16S rRNAD708461389nuccore43057

GC content

  • @ref: 67770
  • GC-content: 70
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 39290

culture collection no.: CIP 105439, JCM 9340, IAM 14814, IFO 16436, NBRC 16436

straininfo link

  • @ref: 94983
  • straininfo: 62690

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology12679539"Green-like" and "red-like" RubisCO cbbL genes in Rhodobacter azotoformans.Uchino Y, Yokota AMol Biol Evol10.1093/molbev/msg1002003Base Sequence, Blotting, Southern, Cluster Analysis, Codon/genetics, DNA Primers, Electrophoresis, *Evolution, Molecular, Likelihood Functions, Molecular Sequence Data, *Phylogeny, Rhodobacter/*genetics, Ribulose-Bisphosphate Carboxylase/*genetics, Sequence Analysis, DNAGenetics
Phylogeny18523181Rhodobacter ovatus sp. nov., a phototrophic alphaproteobacterium isolated from a polluted pond.Srinivas TN, Anil Kumar P, Sasikala Ch, Sproer C, Ramana ChVInt J Syst Evol Microbiol10.1099/ijs.0.65619-02008Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fresh Water/*microbiology, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, *Phototrophic Processes, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacter/*classification/genetics/growth & development/*isolation & purification, Sequence Analysis, DNA, Species Specificity, *Water PollutionGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39290Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105439Collection of Institut Pasteur (CIP 105439)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
94983Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID62690.1

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