@ref: 42683
BacDive-ID: 140076
DSM-Number: 105764
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Campylobacter fetus subsp. testudinum 03-427 is a mesophilic, Gram-negative bacterium that was isolated from human blood culture.
doi: 10.13145/bacdive140076.20250331.9.3
@ref: 42683
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter fetus subsp. testudinum
full scientific name: Campylobacter fetus subsp. testudinum Fitzgerald et al. 2014
strain designation: 03-427, Blaser 03-427
type strain: yes
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 97.455 |
| 125439 | negative | 97.8 |
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 94.863 |
| 125439 | no | 98 |
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68373 | 17272 | propionate | - | assimilation |
| 68373 | 30089 | acetate | + | assimilation |
| 68373 | 30031 | succinate | + | assimilation |
| 68373 | 17634 | D-glucose | - | assimilation |
| 68373 | 16199 | urea | - | hydrolysis |
| 68373 | 17632 | nitrate | + | reduction |
| @ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | is resistant | resistance conc. |
|---|---|---|---|---|---|---|---|
| 68373 | 48923 | erythromycin | yes | yes | 14 µg | ||
| 68373 | 100147 | nalidixic acid | yes | yes | 84 µg |
| @ref | value | activity | ec |
|---|---|---|---|
| 68373 | catalase | + | 1.11.1.6 |
| 68373 | L-aspartate arylamidase | - | 3.4.11.21 |
| 68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68373 | esterase | - | |
| 68373 | urease | - | 3.5.1.5 |
| @ref | URE | NIT | EST | HIP | GGT | TTC | PYRA | ArgA | AspA | PAL | H2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | ERO | CAT |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42683 | - | + | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | +/- | - | - | + |
| 42683 | - | + | - | + | +/- | + | - | +/- | - | +/- | - | - | + | + | +/- | + | - | - | + | - | + |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | #Blood culture |
| #Host | #Human | |
| #Host Body Product | #Fluids | #Blood |
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Campylobacter fetus subsp. testudinum strain FDAARGOS_1591 | 1507806.65 | complete | patric | 1507806 |
| 66792 | Campylobacter fetus subsp. testudinum strain FDAARGOS_1591 | 1507806.64 | complete | patric | 1507806 |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.455 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 73.924 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 94.863 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 82.365 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 86.913 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 64.081 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 68.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 97.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 75.9 |
@ref: 42683
culture collection no.: DSM 105764, ATCC BAA-2539, LMG 27499
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 24336365 | Complete Genome Sequence of Campylobacter fetus subsp. testudinum Strain 03-427T. | Gilbert MJ, Miller WG, Yee E, Blaser MJ, Wagenaar JA, Duim B | Genome Announc | 10.1128/genomeA.01002-13 | 2013 | ||
| Phylogeny | 24899653 | Campylobacter fetus subsp. testudinum subsp. nov., isolated from humans and reptiles. | Fitzgerald C, Tu ZC, Patrick M, Stiles T, Lawson AJ, Santovenia M, Gilbert MJ, van Bergen M, Joyce K, Pruckler J, Stroika S, Duim B, Miller WG, Loparev V, Sinnige JC, Fields PI, Tauxe RV, Blaser MJ, Wagenaar JA | Int J Syst Evol Microbiol | 10.1099/ijs.0.057778-0 | 2014 | Amplified Fragment Length Polymorphism Analysis, Animals, Bacterial Typing Techniques, Campylobacter fetus/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Reptiles/*microbiology, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Pathogenicity |
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42683 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105764 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105764) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68373 | Automatically annotated from API CAM | |||
| 96489 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID387767.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |
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