@ref: 42688
BacDive-ID: 140081
DSM-Number: 105371
keywords: genome sequence, 16S sequence, mesophilic
description: Salimicrobium jeotgali MJ3 is a mesophilic prokaryote that was isolated from fermented anchovy .
| @ref | history |
|---|---|
| 42688 | <- KACC, Korean Agricultural Culture Collection, 166,Nongsaengmyeong-ro,Iseo-myeon,Wanju-Gun,Jeollabuk-do, Republik of Korea; KACC 16972 <- C.O. Jeon, Chung-Ang University; MJ3 |
| 67770 | C. O. Jeon; Chung-Ang Univ., South Korea; MJ3. |
doi: 10.13145/bacdive140081.20251217.10
@ref: 42688
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Salimicrobium
species: Salimicrobium jeotgali
full scientific name: Salimicrobium jeotgali Choi et al. 2014
strain designation: MJ3
type strain: yes
| @ref | growth | type | temperature |
|---|---|---|---|
| 42688 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 42688 | fermented anchovy (myeolchi-jeot) | Seoul | Republic of Korea | KOR | Asia |
| 67770 | Jeotgal, Korean salted and fermented seafood (anchovy jeotgal) | Republic of Korea | KOR | Asia |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Vegetable (incl. Grains) |
| #Engineered | #Food production | #Fermented |
| @ref | description | assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | score |
|---|---|---|---|---|---|---|---|
| 66792 | ASM168543v3 assembly for Salimicrobium jeotgali MJ3 | complete | GCA_001685435 | 1230341.14 | 2814123355 | 1230341 | 97.63 |
| 66792 | ASM1690909v1 assembly for Salimicrobium jeotgali DSM 105371 | contig | GCA_016909095 | 1230341.13 | 2901277488 | 1230341 | 70.33 |
| 67770 | ASM29929v2 assembly for Salimicrobium jeotgali MJ3 | contig | GCA_000299295 | 1230341.3 | 2519899587 | 1230341 | 66.85 |
| @ref | GC-content | method |
|---|---|---|
| 42688 | 46.3 | |
| 67770 | 46.27 | genome sequence analysis |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 90 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 84.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 82.6 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 79.8 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 80.029 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.812 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 79.494 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 51.723 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 89.301 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 66.411 | no |
@ref: 42688
culture collection no.: DSM 105371, JCM 19758, KACC 16972
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 42688 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105371 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105371) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG | |||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | StrainInfo—the central database for linked microbial strain identifiers | 10.1093/database/baaf059 |
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