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BacDive ID 140705
Type strain
Strain Designation CC-YHH650
Culture col. no. BCRC 80935 JCM 31197 CC-YHH650
NCBI tax ID(s) 1848969
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9 (current version):
version 9 (current version)

General

@ref: 43477

BacDive-ID: 140705

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Filimonas aquilariae CC-YHH650 is an aerobe, Gram-negative, motile bacterium that forms irregular colonies and was isolated from agarwood chips.

NCBI tax id

  • NCBI tax id: 1848969
  • Matching level: species

strain history

  • @ref: 67770
  • history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-YHH650.

doi: 10.13145/bacdive140705.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Filimonas
  • species: Filimonas aquilariae
  • full scientific name: Filimonas aquilariae Lin et al. 2017

@ref: 43477

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Chitinophagales

family: Chitinophagaceae

genus: Filimonas

species: Filimonas aquilariae

strain designation: CC-YHH650

type strain: yes

Morphology

cell morphology

  • @ref: 43477
  • gram stain: negative
  • cell length: 1.2-1.4 µm
  • cell width: 0.6-0.8 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

colony morphology

  • @ref: 43477
  • colony size: 1-2 mm
  • colony color: translucent light yellow
  • colony shape: irregular
  • incubation period: 2 days
  • medium used: Nutrient agar

Culture and growth conditions

culture medium

  • @ref: 43477
  • name: Nutrient agar (NA)
  • growth: yes

culture temp

@refgrowthtypetemperature
43477positivegrowth15-37
43477positiveoptimum30
67770positivegrowth30

culture pH

@refabilitytypepH
43477positivegrowth6-8
43477positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43477
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentrationhalophily level
43477NaClpositivegrowth0-1 %(w/v)
43477NaClpositiveoptimum0 %(w/v)non-halophilic

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4347727689decanoate-assimilation
4347717634D-glucose-assimilation
43477casein-hydrolysis
434775291gelatin-hydrolysis
4347728017starch-hydrolysis
4347753424tween 20-hydrolysis
4347753423tween 40-hydrolysis
4347753425tween 60-hydrolysis
4347753426tween 80-hydrolysis
4347740585alpha-cyclodextrin-reduction
4347717754glycerol-reduction
4347714336glycerol 1-phosphate-reduction
4347715978glycerol 3-phosphate-reduction
4347751850methyl pyruvate-reduction
4347716899D-mannitol+assimilation
4347716024D-mannose+assimilation
4347730849L-arabinose+assimilation
4347717925alpha-D-glucose+oxidation
4347717057cellobiose+oxidation
4347712936D-galactose+oxidation
4347718024D-galacturonic acid+oxidation
4347715748D-glucuronate+oxidation
4347716024D-mannose+oxidation
4347723652dextrin+oxidation
4347728066gentiobiose+oxidation
4347724741hydroxyproline+oxidation
4347729991L-aspartate+oxidation
4347718287L-fucose+oxidation
4347715729L-ornithine+oxidation
4347717203L-proline+oxidation
4347762345L-rhamnose+oxidation
4347717716lactose+oxidation
434776359lactulose+oxidation
4347717306maltose+oxidation
4347728053melibiose+oxidation
4347737657methyl D-glucoside+oxidation
4347775146monomethyl succinate+oxidation
4347773784glycyl-l-glutamate+oxidation
4347717992sucrose+oxidation
4347727082trehalose+oxidation
4347732528turanose+oxidation
4347727248urocanic acid+oxidation
4347717632nitrate+reduction

enzymes

@refvalueactivityec
43477DNase-
43477acid phosphatase+3.1.3.2
43477alkaline phosphatase+3.1.3.1
43477esterase (C 4)+
43477esterase Lipase (C 8)+
43477leucine arylamidase+3.4.11.1
43477valine arylamidase+
43477cystine arylamidase+3.4.11.3
43477trypsin+3.4.21.4
43477alpha-chymotrypsin+3.4.21.1
43477naphthol-AS-BI-phosphohydrolase+
43477alpha-galactosidase+3.2.1.22
43477beta-galactosidase+3.2.1.23
43477alpha-glucosidase+3.2.1.20
43477beta-glucosidase+3.2.1.21
43477N-acetyl-beta-glucosaminidase+3.2.1.52
43477alpha-fucosidase+3.2.1.51
43477beta-glucuronidase-3.2.1.31

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43477C14:01.1
    43477C15:1ω5c3.1
    43477C16:03.7
    43477C16:0 3OH5.3
    43477C16:1ω5c4.6
    43477C16:1ω7c / C16:1ω6c13.3
    43477C18:1ω9c1
    43477C13:0 iso3.6
    43477C15:0 iso20.1
    43477C15:0 iso 3OH2.5
    43477C15:1 iso G15
    43477C16:0 iso 3OH1
    43477C17:0 iso1.2
    43477C17:0 iso 3OH18.7
  • type of FA analysis: whole cell analysis
  • incubation medium: NA
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 2
  • incubation pH: 7
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.0
  • library/peak naming table: RTSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43477agarwood chipsNantou CountyTaiwan, Province of ChinaTWNAsia24.097120.856
67770Agarwood chipsNantou CountryTaiwan, Province of ChinaTWNAsia

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Plant
  • Cat3: #Timber

taxonmaps

  • @ref: 69479
  • File name: preview.99_117658.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_185;96_2206;97_59799;98_79438;99_117658&stattab=map
  • Last taxonomy: Filimonas aquilariae subclade
  • 16S sequence: KU248163
  • Sequence Identity:
  • Total samples: 90
  • soil counts: 24
  • aquatic counts: 28
  • animal counts: 9
  • plant counts: 29

Sequence information

16S sequences

  • @ref: 43477
  • description: Filimonas aquilariae 16S ribosomal RNA gene, partial sequence
  • accession: KU248163
  • database: nuccore

GC content

  • @ref: 43477
  • GC-content: 46.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43477

culture collection no.: BCRC 80935, JCM 31197

literature

  • topic: Phylogeny
  • Pubmed-ID: 28829030
  • title: Filimonas aquilariae sp. nov., isolated from agarwood chips.
  • authors: Lin SY, Hameed A, Hsu YH, Liu YC, Lai WA, Young CC
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002087
  • year: 2017
  • mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Taiwan, Thymelaeaceae/*microbiology, Vitamin K 2/analogs & derivatives/chemistry, Wood/*microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43477Shih-Yao Lin, Asif Hameed, Yi-Han Hsu, You-Cheng Liu, Wei-An Lai, Chiu-Chung YoungFilimonas aquilariae sp. nov., isolated from agarwood chips10.1099/ijsem.0.002087IJSEM 67: 3219-3225 201728829030
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/

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