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BacDive ID 14561
Type strain
Strain Designation K 21
Culture col. no. DSM 20352 ATCC 29070 CCUG 15599 K 21 NRRL B-14758 NCTC 12102 LMG 21025 CIP 81.63 CCM 3472 BCRC 12926 JCM 2426 6 more
NCBI tax ID(s) 42858
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.3 (current version):
version 9.3 (current version)

General

@ref: 8614

BacDive-ID: 14561

DSM-Number: 20352

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped

description: Staphylococcus lentus K 21 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from udder of goat.

NCBI tax id

  • NCBI tax id: 42858
  • Matching level: species

strain history

@refhistory
8614<- K.H. Schleifer <- W.E. Kloos, K 21
67770ATCC 29070 <-- W. E. Kloos K21 <-- K. H. Schleifer <-- M. Rogvinsky.
120584CIP <- 1981, J. Pillet, Inst. Pasteur, Paris, France <- ATCC <- W.E. Kloos: strain K21, Staphylococcus sciuri subsp. lentus <- K.H. Schleifer, Germany <- M. Rogvinski

doi: 10.13145/bacdive14561.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus lentus
  • full scientific name: Staphylococcus lentus (Kloos et al. 1976) Schleifer et al. 1983

  • synonyms

    @refsynonym
    20215Staphylococcus sciuri subsp. lentus
    20215Mammaliicoccus lentus

@ref: 8614

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Mammaliicoccus

species: Mammaliicoccus lentus

full scientific name: Mammaliicoccus lentus (Kloos et al. 1976) Madhaiyan et al. 2020

strain designation: K 21

type strain: yes

Morphology

cell morphology

  • @ref: 120584
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

@reftype of hemolysis
8614gamma
120584

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8614COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8614TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
42180MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
120584CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
8614positivegrowth37
42180positivegrowth37
67770positivegrowth37
120584positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
120584facultative anaerobe
125439obligate aerobe92

murein

  • @ref: 8614
  • murein short key: A11.08
  • type: A3alpha L-Lys-L-Ala-Gly4-5

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837522599arabinose-fermentation
6837532528turanose-fermentation
6837517632nitrate+reduction
6837517057cellobiose+fermentation
6837516988D-ribose-fermentation
6837527082trehalose+fermentation
6837517306maltose+fermentation
6837515824D-fructose+fermentation
6837517634D-glucose+fermentation
683754853esculin+hydrolysis
6837518257ornithine-degradation
6837529016arginine-hydrolysis
12058417632nitrate+reduction
12058416301nitrite-reduction
12058435020tributyrin-hydrolysis
68371Potassium 5-ketogluconate-builds acid from
6837127613amygdalin+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837516634raffinose+fermentation
6837516899D-mannitol+fermentation
6837517716lactose+fermentation
6837516024D-mannose+fermentation
6837516199urea-hydrolysis
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837118305arbutin+builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from

antibiotic resistance

  • @ref: 120584
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120584
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 120584
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
120584oxidase-
120584beta-galactosidase+3.2.1.23
120584alcohol dehydrogenase-1.1.1.1
120584gelatinase-
120584DNase+/-
120584catalase+1.11.1.6
120584coagulase-
120584lecithinase-
120584lysine decarboxylase-4.1.1.18
120584ornithine decarboxylase-4.1.1.17
120584urease-3.5.1.5
68375beta-glucuronidase-3.2.1.31
68375beta-glucosidase+3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120584+/----+/-----++++----+---++++++++/-+/-++--+---++--+/-------

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
8614---+++++++++-+++-++/-++/-+/-+---
8614---+++++++++-++-+-+--++/----
8614---+++++++++-++-----+++---
8614---+++++++++-++----++++---
8614---+++++++++-++------++---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8614udder of goat
46286Goat udderNovzillyFranceFRAEurope
67770Goat udderNovzillyFranceFRAEurope
120584Animal, Goat, udderNouzillyFranceFRAEurope

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body-Site

taxonmaps

  • @ref: 69479
  • File name: preview.99_116.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3;97_96;98_105;99_116&stattab=map
  • Last taxonomy: Staphylococcus
  • 16S sequence: LC383925
  • Sequence Identity:
  • Total samples: 7505
  • soil counts: 269
  • aquatic counts: 251
  • animal counts: 6869
  • plant counts: 116

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
8614yes, in single casesyes, in single cases1Risk group (German classification)
1205841Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
8614Staphylococcus lentus gene for 16S rRNA, partial sequence, strain: ATCC 29070 (= MAFF 911385)D833701480nuccore42858
67770Staphylococcus lentus JCM 2426 gene for 16S ribosomal RNA, partial sequenceLC3839251478nuccore42858

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus lentus strain NCTC 1210242858.16wgspatric42858
66792Staphylococcus lentus strain NCTC1210242858.17wgspatric42858
67770Mammaliicoccus lentus NCTC 12102GCA_002902755contigncbi42858
67770Mammaliicoccus lentus NCTC12102GCA_900458735contigncbi42858

GC content

@refGC-contentmethod
861434.2
6777031.9genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes85.057no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no98.421no
125438spore-formingspore-formingAbility to form endo- or exosporesno65.243no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes71.601no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno93.579no
125438motile2+flagellatedAbility to perform flagellated movementno77.882no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno55.6
125439BacteriaNetmotilityAbility to perform movementyes53.9
125439BacteriaNetgram_stainReaction to gram-stainingpositive72.5
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe92

External links

@ref: 8614

culture collection no.: DSM 20352, ATCC 29070, CCUG 15599, JCM 2426, BCRC 12926, CCM 3472, CIP 81.63, LMG 21025, NCTC 12102, NRRL B-14758

literature

  • Pubmed-ID: 23194736
  • title: Elevation of Staphylococcus sciuri subsp. lentus (Kloos et al.) to Species Status: Staphylococcus lentus (Kloos et al.) comb. nov.
  • authors: Schleifer KH, Geyer U, Kilpper-Balz R, Devriese LA
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/S0723-2020(83)80022-8
  • year: 1983

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8614Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20352)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20352
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
42180Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11227
46286Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15599)https://www.ccug.se/strain?id=15599
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
120584Curators of the CIPCollection of Institut Pasteur (CIP 81.63)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2081.63
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1

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