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BacDive ID 14563
Type strain
Strain Designation N850412
Culture col. no. DSM 4805 N850412
NCBI tax ID(s) 28035
Links
version 10 (current version)

General

@ref: 1828

BacDive-ID: 14563

DSM-Number: 4805

keywords: 16S sequence, mesophilic

description: Staphylococcus lugdunensis N850412 is a mesophilic prokaryote that was isolated from blood.

NCBI tax id

  • NCBI tax id: 28035
  • Matching level: species

strain history

  • @ref: 1828
  • history: <- J. Fleurette <- Centre National des Staphylocoques, Lyon N850412

doi: 10.13145/bacdive14563.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/bacillati
  • keyword: phylum/bacillota
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus lugdunensis
  • full scientific name: Staphylococcus lugdunensis Freney et al. 1988

@ref: 1828

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus lugdunensis

full scientific name: Staphylococcus lugdunensis Freney et al. 1988

strain designation: N850412

type strain: no

Morphology

colony morphology

  • @ref: 1828
  • type of hemolysis: beta
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1828COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
1828TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 1828
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

murein

  • @ref: 1828
  • murein short key: A11.02
  • type: A3alpha L-Lys-Gly5-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837522599arabinose-fermentation
6837559640N-acetylglucosamine+fermentation
6837517992sucrose+fermentation
6837517632nitrate+reduction
6837517057cellobiose-fermentation
6837516988D-ribose-fermentation
6837516634raffinose-fermentation
6837516899D-mannitol-fermentation
6837527082trehalose+fermentation
6837517306maltose+fermentation
6837516024D-mannose+fermentation
6837515824D-fructose+fermentation
6837517634D-glucose+fermentation
683754853esculin+hydrolysis
6837518257ornithine+degradation
6837529016arginine-hydrolysis
6837516199urea+hydrolysis

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is resistant: yes
  • resistance conc.: 1.8 µg

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
1828catalase+1.11.1.6
1828cytochrome-c oxidase-1.9.3.1
68375pyrrolidonyl arylamidase+3.4.19.3
68375beta-glucuronidase-3.2.1.31
68375ornithine decarboxylase+4.1.1.17
68375urease+3.5.1.5
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase+3.2.1.21
68375arginine dihydrolase-3.5.3.6

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
1828+-+++++++/-+----++--+/-+++++/---

Isolation, sampling and environmental information

isolation

  • @ref: 1828
  • sample type: blood

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Infection#Patient

Interaction and safety

risk assessment

  • @ref: 1828
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Staphylococcus lugdunensis strain DSM 4805 16S ribosomal RNA gene, partial sequence
  • accession: AY688075
  • length: 464
  • database: nuccore
  • NCBI tax ID: 28035

GC content

  • @ref: 1828
  • GC-content: 32.0

Literature

@ref: 1828

culture collection no.: DSM 4805

straininfo link

  • @ref: 126262
  • straininfo: 47868

literature

  • topic: Phylogeny
  • Pubmed-ID: 24750818
  • title: Identification of airborne microbiota in selected areas in a health-care setting in South Africa.
  • authors: Setlhare G, Malebo N, Shale K, Lues R.
  • journal: BMC Microbiol
  • DOI: 10.1186/1471-2180-14-100
  • year: 2014
  • mesh: classification, isolation & purification, classification, isolation & purification, Air Microbiology, Biodiversity, Health Facilities
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1828Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4805)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4805
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
68375Automatically annotated from API ID32STA
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer10.1093/database/baaf059StrainInfo—the central database for linked microbial strain identifiers