@ref: 52035
BacDive-ID: 147819
keywords: genome sequence, 16S sequence, microaerophile, mesophilic
description: Aggregatibacter aphrophilus CCUG 34290 is a microaerophile, mesophilic prokaryote of the family Pasteurellaceae.
doi: 10.13145/bacdive147819.20251217.10
| @ref | synonym |
|---|---|
| 20215 | Haemophilus paraphrophilus |
| 20215 | Haemophilus aphrophilus |
@ref: 52035
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Aggregatibacter
species: Aggregatibacter aphrophilus
type strain: no
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | negative | 99.4 | |
| 125438 | 90.988 | no | |
| 125438 | negative | 97.938 |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 52035 | microaerophile | |
| 125439 | obligate aerobe | 92.2 |
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 99.4 |
| 125438 | no | 90.561 |
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68377 | 27897 | tryptophan | - | energy source |
| 68377 | 17306 | maltose | + | builds acid from |
| 68377 | 15824 | D-fructose | + | builds acid from |
| 68377 | 16199 | urea | - | hydrolysis |
| 68377 | 18257 | ornithine | - | degradation |
| 68377 | 17992 | sucrose | + | builds acid from |
| 68377 | 17634 | D-glucose | + | builds acid from |
| @ref | value | activity | ec |
|---|---|---|---|
| 68382 | alpha-fucosidase | - | 3.2.1.51 |
| 68382 | alpha-mannosidase | - | 3.2.1.24 |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68382 | beta-glucosidase | - | 3.2.1.21 |
| 68382 | alpha-glucosidase | - | 3.2.1.20 |
| 68382 | beta-glucuronidase | - | 3.2.1.31 |
| 68382 | beta-galactosidase | - | 3.2.1.23 |
| 68382 | alpha-galactosidase | - | 3.2.1.22 |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | |
| 68382 | acid phosphatase | + | 3.1.3.2 |
| 68382 | cystine arylamidase | - | 3.4.11.3 |
| 68382 | trypsin | - | 3.4.21.4 |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 |
| 68382 | valine arylamidase | - | |
| 68382 | leucine arylamidase | + | 3.4.11.1 |
| 68382 | lipase (C 14) | - | |
| 68382 | esterase lipase (C 8) | - | |
| 68382 | esterase (C 4) | - | |
| 68377 | beta-galactosidase | - | 3.2.1.23 |
| 68377 | urease | - | 3.5.1.5 |
| 68377 | lipase | - | |
| 68377 | alkaline phosphatase | + | 3.1.3.1 |
| 68377 | ornithine decarboxylase | - | 4.1.1.17 |
| 68377 | tryptophan deaminase | - | 4.1.99.1 |
| 68377 | gamma-glutamyltransferase | - | 2.3.2.2 |
| 68377 | proline-arylamidase | - | 3.4.11.5 |
| 68377 | beta-lactamase | - | 3.5.2.6 |
| 68382 | alkaline phosphatase | + | 3.1.3.1 |
| @ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52035 | - | + | - | - | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
| @ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52035 | - | + | + | + | + | - | - | - | + | - | - | - | - |
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 124043 | Aggregatibacter aphrophilus strain ATCC 7901 16S ribosomal RNA gene, partial sequence. | HQ009508 | 1426 | nuccore | 732 |
| 124043 | Aggregatibacter aphrophilus strain ATCC 7901 16S ribosomal RNA gene, partial sequence. | M75040 | 1480 | nuccore | 732 |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.938 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.195 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 84.506 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.561 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90.988 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 66.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 92.2 |
@ref: 52035
culture collection no.: CCUG 34290, ATCC 7901
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 3767569 | Relationships among isolates of oral haemophili as determined by DNA-DNA hybridization. | Potts TV, Mitra T, O'Keefe T, Zambon JJ, Genco RJ | Arch Microbiol | 10.1007/BF00446770 | 1986 | Actinobacillus/*classification/genetics, Cytosine/analysis, DNA, Bacterial/*analysis, Guanine/analysis, Haemophilus/*classification/genetics, Humans, Nucleic Acid Hybridization, Sequence Homology, Nucleic Acid | Pathogenicity |
| Phylogeny | 18768654 | Analysis of mixed sequencing chromatograms and its application in direct 16S rRNA gene sequencing of polymicrobial samples. | Kommedal O, Karlsen B, Saebo O. | J Clin Microbiol | 10.1128/jcm.00213-08 | 2008 | classification, genetics, chemistry, chemistry, genetics, methods | |
| Phylogeny | 24696434 | Classification, identification, and clinical significance of Haemophilus and Aggregatibacter species with host specificity for humans. | Norskov-Lauritsen N. | Clin Microbiol Rev | 10.1128/cmr.00103-13 | 2014 | classification, physiology, microbiology, microbiology, Host Specificity, classification, physiology | Pathogenicity |
| Enzymology | 27335148 | Duplex Quantitative PCR Assay for Detection of Haemophilus influenzae That Distinguishes Fucose- and Protein D-Negative Strains. | de Gier C, Pickering JL, Richmond PC, Thornton RB, Kirkham LA. | J Clin Microbiol | 10.1128/jcm.00982-16 | 2016 | genetics, isolation & purification, deficiency, deficiency, deficiency, methods, methods | Phylogeny |
| Enzymology | 29381805 | A loop-mediated isothermal amplification procedure targeting the sodA gene for rapid and specific identification of Gallibacterium anatis. | Stepien-Pysniak D, Kosikowska U, Hauschild T, Burzynski A, Wilczynski J, Kolinska A, Nowaczek A, Marek A | Poult Sci | 10.3382/ps/pex420 | 2018 | Animals, Bacterial Proteins/*isolation & purification, *Chickens, Female, Nucleic Acid Amplification Techniques/methods/*veterinary, Pasteurellaceae/*isolation & purification, Pasteurellaceae Infections/diagnosis/microbiology/*veterinary, Poultry Diseases/*diagnosis/microbiology, Superoxide Dismutase/*isolation & purification, *Turkeys | Phylogeny |
| 30598730 | Role of OmpA1 and OmpA2 in Aggregatibacter actinomycetemcomitans and Aggregatibacter aphrophilus serum resistance. | Lindholm M, Min Aung K, Nyunt Wai S, Oscarsson J. | J Oral Microbiol | 10.1080/20002297.2018.1536192 | 2019 | Aggregatibacter Aphrophilus, Aggregatibacter Actinomycetemcomitans, Serum Resistance, Outer Membrane Protein A | ||
| 32015929 | Osteoarticular Infection in Three Young Thoroughbred Horses Caused by a Novel Gram Negative Cocco-Bacillus. | Hudson BJ, Chicken C, Blishen A, Todhunter KH, Begg AP, Chan L, Karagiannis T, Raymond B, Bogema D, Adkins AR, O'Sullivan CB, O'Rourke BA, Roy Chowdhury P, Djordjevic SP, Charles IG, Edgar A, Mitsakos K. | Case Rep Vet Med | 10.1155/2020/9785861 | 2020 | |||
| 38650989 | Bacterial symbionts in oral niche use type VI secretion nanomachinery for fitness increase against pathobionts. | Oscarsson J, Bao K, Shiratsuchi A, Grossmann J, Wolski W, Aung KM, Lindholm M, Johansson A, Mowsumi FR, Wai SN, Belibasakis GN, Bostanci N. | iScience | 10.1016/j.isci.2024.109650 | 2024 | Bacteriology, Microbial flora, Microbial Interactions |
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 52035 | Curators of the CCUG | https://www.ccug.se/strain?id=34290 | Culture Collection University of Gothenburg (CCUG) (CCUG 34290) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68377 | Automatically annotated from API NH | |||
| 68382 | Automatically annotated from API zym | |||
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG | |
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | StrainInfo—the central database for linked microbial strain identifiers | 10.1093/database/baaf059 |
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