@ref: 60321
BacDive-ID: 154665
keywords: genome sequence, 16S sequence, anaerobe, mesophilic
description: Prevotella oulorum CCUG 54769 is an anaerobe, mesophilic prokaryote that was isolated from Human subgingival plaque/gingival crevice.
doi: 10.13145/bacdive154665.20251217.10
| @ref | synonym |
|---|---|
| 20215 | Segatella oulorum |
| 20215 | Prevotella oulora |
| 20215 | Bacteroides oulorum |
@ref: 60321
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Prevotellaceae
genus: Prevotella
species: Prevotella oulorum
type strain: yes
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 97.678 |
| 125439 | negative | 99.5 |
| @ref | growth | type | temperature |
|---|---|---|---|
| 60321 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 60321 | anaerobe | |
| 125438 | anaerobe | 91.995 |
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 91.953 |
| 125439 | no | 99.8 |
| @ref | sample type |
|---|---|
| 60321 | Human subgingival plaque/gingival crevice |
| 67770 | Gingival crevices |
| Cat1 | Cat2 |
|---|---|
| #Host | #Human |
| #Host Body-Site | #Oral cavity and airways |
| #Infection | #Patient |
| @ref | description | assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | score |
|---|---|---|---|---|---|---|---|
| 67770 | ASM61378v1 assembly for Segatella oulorum JCM 14966 | contig | GCA_000613785 | 1236497.4 | 2585427905 | 1236497 | 14.36 |
| 67770 | IMG-taxon 2585428083 annotated assembly for Segatella oulorum ATCC 43324 | scaffold | GCA_900167385 | 28136.6 | 2585428083 | 28136 | 60.54 |
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Prevotella oulorum gene for 16S ribosomal RNA, partial sequence, strain: JCM 14966 | AB547702 | 1491 | nuccore | 28136 |
| 67770 | Prevotella oulora 16S ribosomal RNA gene, partial sequence | L16472 | 1513 | nuccore | 28136 |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 74.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 79.6 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.8 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.678 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 91.995 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.953 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.88 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.484 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 89 | no |
@ref: 60321
culture collection no.: CCUG 54769, JCM 14966, ATCC 43324, NCTC 12747, CCUG 20177, CIP 104477, JCM 13451, NCTC 11871
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 60321 | Curators of the CCUG | https://www.ccug.se/strain?id=54769 | Culture Collection University of Gothenburg (CCUG) (CCUG 54769) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG | |
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | StrainInfo—the central database for linked microbial strain identifiers | 10.1093/database/baaf059 |
License