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BacDive ID 1573
Type strain
Strain Designation P4B
Culture col. no. DSM 25260 CCM 7963 CECT 7998 IBRC-M 10614 KCTC 13821 P4B 1 more
NCBI tax ID(s) 930129
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.3 (current version):
version 9.3 (current version)

General

@ref: 17959

BacDive-ID: 1573

DSM-Number: 25260

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Alteribacillus bidgolensis P4B is an aerobe, spore-forming, mesophilic bacterium that was isolated from water from a hypersaline lake.

NCBI tax id

  • NCBI tax id: 930129
  • Matching level: species

strain history

@refhistory
17959<- M. A. Amoozegar, Univ. Tehran, Iran; P4B <- M. Bagheri
67771<- M A Amoozegar, Univ. of Tehran, Iran

doi: 10.13145/bacdive1573.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Alteribacillus
  • species: Alteribacillus bidgolensis
  • full scientific name: Alteribacillus bidgolensis Didari et al. 2012

@ref: 17959

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Alteribacillus

species: Alteribacillus bidgolensis

full scientific name: Alteribacillus bidgolensis Didari et al. 2012

strain designation: P4B

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30351positive2.45 µm0.85 µmrod-shapedno
67771rod-shapedno
67771positive

pigmentation

  • @ref: 30351
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17959
  • name: MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514b
  • composition: Name: MEDIUM 514 plus additional salt (DSMZ Medium 514b; with strain-specific modifications) Composition: NaCl 50.0 g/l Agar 17.5 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperature
17959positivegrowth30
30351positivegrowth25-40
30351positiveoptimum35
67771positivegrowth35

culture pH

@refabilitytypepHPH range
30351positivegrowth6.5-10alkaliphile
30351positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
30351aerobe
67771aerobe
125439obligate aerobe93.8

spore formation

@refspore formationtype of spore
30351yes
67771yesendospore

halophily

@refsaltgrowthtested relationconcentration
30351NaClpositivegrowth0.5-12.5 %
30351NaClpositiveoptimum6.25 %

observation

  • @ref: 67771
  • observation: quinones: MK-7, MK-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3035122599arabinose+carbon source
3035129016arginine+carbon source
3035122653asparagine+carbon source
3035117057cellobiose+carbon source
3035116947citrate+carbon source
3035128757fructose+carbon source
3035117234glucose+carbon source
3035117754glycerol+carbon source
3035127570histidine+carbon source
3035125017leucine+carbon source
3035129864mannitol+carbon source
3035116634raffinose+carbon source
3035133942ribose+carbon source
3035117992sucrose+carbon source
3035127082trehalose+carbon source
3035117632nitrate+reduction

enzymes

@refvalueactivityec
30351catalase+1.11.1.6
30351cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17959water from a hypersaline lakeAran-Bidgol lakeIranIRNAsia
67771From water from a hypersaline lakeAran-Bidgol Salt LakeIranIRNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_20885.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_605;96_10605;97_12823;98_15776;99_20885&stattab=map
  • Last taxonomy: Alteribacillus bidgolensis subclade
  • 16S sequence: HQ433453
  • Sequence Identity:
  • Total samples: 14
  • soil counts: 5
  • animal counts: 7
  • plant counts: 2

Safety information

risk assessment

  • @ref: 17959
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17959
  • description: Alteribacillus bidgolensis strain P4B 16S ribosomal RNA gene, partial sequence
  • accession: HQ433453
  • length: 1486
  • database: nuccore
  • NCBI tax ID: 930129

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alteribacillus bidgolensis DSM 25260GCA_002886255scaffoldncbi930129
66792Alteribacillus bidgolensis P4B,CCM 7963,CECT 7998,DSM 25260,IBRC-M 10614,KCTC 13821GCA_900099745scaffoldncbi930129
66792Alteribacillus bidgolensis strain DSM 25260930129.8wgspatric930129
66792Alteribacillus bidgolensis strain P4B,CCM 7963,CECT 7998,DSM 25260,IBRC-M 10614,KCTC 13821930129.4wgspatric930129

GC content

@refGC-contentmethod
1795938.9high performance liquid chromatography (HPLC)
3035138.9

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes83.427yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.804yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes82.278yes
125438spore-formingspore-formingAbility to form endo- or exosporesyes89.256yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno89.141yes
125438motile2+flagellatedAbility to perform flagellated movementyes56.367yes
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes87.4
125439BacteriaNetmotilityAbility to perform movementyes83.5
125439BacteriaNetgram_stainReaction to gram-stainingvariable81.3
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe93.8

External links

@ref: 17959

culture collection no.: DSM 25260, CCM 7963, CECT 7998, IBRC-M 10614, KCTC 13821

straininfo link

  • @ref: 71218
  • straininfo: 377925

literature

  • topic: Phylogeny
  • Pubmed-ID: 22228653
  • title: Alteribacillus bidgolensis gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Bacillus persepolensis as Alteribacillus persepolensis comb. nov.
  • authors: Didari M, Amoozegar MA, Bagheri M, Schumann P, Sproer C, Sanchez-Porro C, Ventosa A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.034173-0
  • year: 2012
  • mesh: Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Iran, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
17959Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25260)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25260
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30351Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2669228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71218Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377925.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1

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