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BacDive ID 157629
Type strain
Strain Designation ORG 4, ORG4
Culture col. no. DSM 28529 ORG 4 ORG4
NCBI tax ID(s) 1680
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 10 (current version):
version 10 (current version)

General

@ref: 64198

BacDive-ID: 157629

DSM-Number: 28529

keywords: 16S sequence, mesophilic

description: Bifidobacterium adolescentis ORG 4 is a mesophilic prokaryote that was isolated from orangutan faeces.

NCBI tax id

  • NCBI tax id: 1680
  • Matching level: species

strain history

  • @ref: 64198
  • history: <- P. Mattarelli; ORG4 <- M. Modesto, Dept. Agricul. Scs., Univ. Bologna, Italy <- M. R. D'Aimmo, Chalmers Univ. of Technol., Dept. of Chemical and Biological Eng., Gothenburg, Sweden

doi: 10.13145/bacdive157629.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/bacillati
  • keyword: phylum/actinomycetota
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium adolescentis
  • full scientific name: Bifidobacterium adolescentis Reuter 1963 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Bifidobacterium stercoris
    20215Bifidobacterium faecale

@ref: 64198

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium adolescentis

full scientific name: Bifidobacterium adolescentis Reuter 1963 emend. Nouioui et al. 2018

strain designation: ORG 4, ORG4

type strain: no

Culture and growth conditions

culture medium

  • @ref: 64198
  • name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/58
  • composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

culture temp

  • @ref: 64198
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-fucose-builds acid from28847
68371L-fucose-builds acid from18287
68371turanose+builds acid from32528
68371D-lyxose-builds acid from62318
68371melezitose-builds acid from6731
68371raffinose+builds acid from16634
68371starch+builds acid from28017
68371glycogen+builds acid from28087
68371xylitol-builds acid from17151
68371sucrose+builds acid from17992
68371trehalose+builds acid from27082
68371maltose+builds acid from17306
68371lactose+builds acid from17716
68371esculin+builds acid from4853
68371salicin+builds acid from17814
68371cellobiose+builds acid from17057
68371amygdalin+builds acid from27613
68371D-mannose-builds acid from16024
68371L-sorbose-builds acid from17266
68371L-rhamnose-builds acid from62345
68371galactitol-builds acid from16813
68371myo-inositol-builds acid from17268
68371D-mannitol+builds acid from16899
68371D-sorbitol+builds acid from17924
68371methyl alpha-D-mannoside-builds acid from43943
68371ribitol-builds acid from15963
68371methyl beta-D-xylopyranoside-builds acid from74863
68371D-ribose+builds acid from16988
68371D-xylose+builds acid from65327
68371erythritol-builds acid from17113
68371D-arabinose-builds acid from17108
68371D-arabitol-builds acid from18333
68371D-tagatose-builds acid from16443
68371gentiobiose+builds acid from28066
68371inulin-builds acid from15443
68371melibiose+builds acid from28053
68371arbutin+builds acid from18305
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371L-xylose-builds acid from65328
68371L-arabinose+builds acid from30849
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
64198----+++---+++-----++-+-++++++++++--+++-++---------

Isolation, sampling and environmental information

isolation

  • @ref: 64198
  • sample type: orangutan faeces
  • geographic location: Borås Djurpark
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Primates

Interaction and safety

risk assessment

  • @ref: 64198
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64198
  • description: Bifidobacterium adolescentis strain ORG4 16S ribosomal RNA gene, partial sequence
  • accession: KF468644
  • length: 849
  • database: nuccore
  • NCBI tax ID: 1680

Literature

@ref: 64198

culture collection no.: DSM 28529

straininfo link

  • @ref: 126262
  • straininfo: 406870

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
64198Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28529Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28529)
68371Automatically annotated from API 50CH acid
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. ReimerStrainInfo—the central database for linked microbial strain identifiers10.1093/database/baaf059

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