@ref: 8988
BacDive-ID: 1580
DSM-Number: 20664
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic
description: Acetomicrobium flavidum P is an anaerobe, spore-forming, thermophilic bacterium that was isolated from sewage sludge.
doi: 10.13145/bacdive1580.20250331.9.3
@ref: 8988
domain: Bacteria
phylum: Synergistetes
class: Synergistia
order: Bacteroidales
family: Synergistaceae
genus: Acetomicrobium
species: Acetomicrobium flavidum
full scientific name: Acetomicrobium flavidum Soutschek et al. 1985
strain designation: P
type strain: yes
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 8988 | anaerobe | |
| 125438 | anaerobe | 91.459 |
| 125439 | anaerobe | 99 |
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetomicrobium flavidum strain DSM 20664 | 49896.3 | wgs | patric | 49896 |
| 66792 | Acetomicrobium flavidum DSM 20664 | 2695420966 | draft | img | 49896 |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 83.294 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 91.459 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 80.406 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 97.53 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | yes | 75.966 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 63.197 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 70.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 59.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 67.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 99 |
@ref: 8988
culture collection no.: DSM 20664, ATCC 43122
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 8988 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20664) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20664 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 71225 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID72.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |
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