Archive BacDiveID:10.13145/bacdive158425.20241212.9.2

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BacDive ID 158425

Type strain

Culture col. no. DSM 105360 TBL 1200985 ATCC TSD-117

NCBI tax ID(s) 1430326

Links

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For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 65101

BacDive-ID: 158425

DSM-Number: 105360

keywords: 16S sequence, Bacteria, mesophilic

description: Mycobacterium decipiens DSM 105360 is a mesophilic bacterium that was isolated from biopsy right thumb, human .

NCBI tax id

NCBI tax id: 1430326
Matching level: species

strain history

@ref: 65101
history: <- E. Tortoli, San Raffaele Scientific Institute, Milano, Italy; TBL 1200985 <- B. A. Brown-Elliot, Univ. of Texas, Health Science Center at tyler (UTHSCT), Mycobacteria/Nocardia Laboratory, Tyler, Texas USA; TBL 1200985 <- N. Wengenack, Mayo Medical Laboratories, Andover, USA; TBL 1200985 <- J. Branda, Massachusetts General Hospital, Boston, USA; TBL 1200985

doi: 10.13145/bacdive158425.20241212.9.2

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium decipiens
full scientific name: Mycobacterium decipiens Brown-Elliott et al. 2018

@ref: 65101

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium decipiens

full scientific name: Mycobacterium decipiens Brown-Elliott et al. 2018

type strain: yes

Morphology

cell morphology

@ref: 66742
motility: no

pigmentation

@ref: 66742
production: no

multimedia

@ref: 65101
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105360.jpg
caption: Medium 645 37°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
65101	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	yes	https://mediadive.dsmz.de/medium/645	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
66742	Mac-Conkey agar without crystal violet	no
66742	solid media	yes
66742	standard media	no

culture temp

@ref	growth	type	temperature
65101	positive	growth	37
66742	positive	growth	25-37

Physiology and metabolism

spore formation

@ref: 66742
spore formation: no

observation

@ref: 66742
observation: mycobacterial strain with close similarity to the Mycobacterium tuberculosis complex (MTBC)

metabolite utilization

@ref: 66742
Chebi-ID: 53426
metabolite: tween 80
utilization activity: -
kind of utilization tested: hydrolysis

antibiotic resistance

@ref	ChEBI	metabolite	is antibiotic	is sensitive	sensitivity conc.	is resistant	resistance conc.
66742	2637	Amikacin	yes	yes	1 µg/mL
66742	100241	ciprofloxacin	yes			yes	4 µg/mL
66742	3732	clarithromycin	yes	yes	4 µg/mL
66742	50845	doxycycline	yes	yes	0.5 µg/mL
66742	63607	linezolid	yes	yes	1 µg/mL
66742	63611	moxifloxacin	yes	yes	0.5 µg/mL
66742	45367	rifabutin	yes	yes	0.25 µg/mL
66742	28077	rifampicin	yes			yes	2 µg/mL

enzymes

@ref	value	activity	ec
66742	beta-glucosidase	-	3.2.1.21
66742	nitrate reductase	-	1.7.99.4
66742	urease	-	3.5.1.5
66742	catalase	+	1.11.1.6

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent	latitude	longitude	sampling date	enrichment culture	enrichment culture duration	enrichment culture temperature
65101	biopsy right thumb, human (58-year-old female)	Boston, MA	USA	USA	North America	42.361	-71.057
66742	cutaneous lesions from a 58-year-old female reporting swelling and pain at the right thumb and wrist for 8 months		USA	USA	North America			2012	solid media	20 days	25-37

isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	#Biopsy
#Host	#Human	#Female
#Host Body-Site	#Limb	#Hand

taxonmaps

@ref: 69479
File name: preview.99_45.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_37;97_39;98_43;99_45&stattab=map
Last taxonomy: Mycobacterium
16S sequence: KF683289
Sequence Identity:
Total samples: 34150
soil counts: 16288
aquatic counts: 7630
animal counts: 6565
plant counts: 3667

Sequence information

16S sequences

@ref: 66742
description: Mycobacterium sp. TBL 1200985 16S ribosomal RNA gene, partial sequence
accession: KF683289
length: 1504
database: nuccore
NCBI tax ID: 1430326

GC content

@ref: 66742
GC-content: 65.4

External links

@ref: 65101

culture collection no.: DSM 105360, TBL 1200985, ATCC TSD-117

straininfo link

@ref: 111226
straininfo: 404588

literature

topic: Phylogeny
Pubmed-ID: 30204586
title: Mycobacterium decipiens sp. nov., a new species closely related to the Mycobacterium tuberculosis complex.
authors: Brown-Elliott BA, Simmer PJ, Trovato A, Hyle EP, Droz S, Buckwalter SP, Borroni E, Branda JA, Iana E, Mariottini A, Nelson J, Matteelli A, Toney NC, Scarparo C, de Man TJB, Vasireddy R, Gandhi RT, Wengenack NL, Cirillo DM, Wallace RJ, Tortoli E
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijsem.0.003031
year: 2018
mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Humans, Italy, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/*microbiology, Mycobacterium tuberculosis, Mycolic Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tuberculosis, Cutaneous/*microbiology, United States
topic2: Pathogenicity

Reference

@id	authors	title	doi/url	catalogue	journal	pubmed
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
65101	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-105360	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105360)
66742	Barbara A. Brown-Elliott, Patricia J. Simmer, Alberto Trovato, Emily P. Hyle, Sara Droz, Seanne P. Buckwalter, Emanuele Borroni, John A. Branda, Elkina Iana, Alessandro Mariottini, Jameelah Nelson, Alberto Matteelli, Nadege C. Toney, Claudio Scarparo, Tom J. B. de Man, Ravikiran Vasireddy, Rajesh T. Gandhi, Nancy L. Wengenack, Daniela M. Cirillo, Richard J. Wallace and Enrico Tortoli	Mycobacterium decipiens sp. nov., a new species closely related to the Mycobacterium tuberculosis complex	10.1099/ijsem.0.003031		IJSEM 68: 3557-3562 2018	30204586
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
111226	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID404588.1

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Archive

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

Morphology

cell morphology

pigmentation

multimedia

Culture and growth conditions

culture medium

culture temp

Physiology and metabolism

spore formation

observation

metabolite utilization

antibiotic resistance

enzymes

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Sequence information

16S sequences

GC content

External links

straininfo link

literature

Reference

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