@ref: 65175
BacDive-ID: 158499
DSM-Number: 103433
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Ligilactobacillus salitolerans YK43 is a mesophilic bacterium that was isolated from mushroom bed.
| @ref | history |
|---|---|
| 65175 | <- M. Tohno, National Agriculture and Food Research Organization, Nasushiobara, Japan; YK43 |
| 67770 | M. Tohno; NARO Inst. of Livestock & Grassland Sci., Japan; YK43. |
doi: 10.13145/bacdive158499.20250331.9.3
@ref: 65175
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus salitolerans
full scientific name: Ligilactobacillus salitolerans (Tohno et al. 2019) Zheng et al. 2020
strain designation: YK43
type strain: yes
| @ref | growth | type | temperature |
|---|---|---|---|
| 65175 | positive | growth | 30 |
| 67770 | positive | growth | 30 |
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 65175 | mushroom bed | Tochigi | Japan | JPN | Asia |
| 67770 | Spent mushroom substrates stored in Nagano | Japan | JPN | Asia |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Fungi | #Mushroom |
| #Engineered | #Agriculture | |
| #Engineered | #Agriculture | #Garden |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.678 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 83.283 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 91.904 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 79.532 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.374 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 58 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 59.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 62.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 79.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 96 |
@ref: 65175
culture collection no.: DSM 103433, JCM 31331
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65175 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103433 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103433) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111294 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408167.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |
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