@ref: 65224
BacDive-ID: 158537
keywords: genome sequence, 16S sequence, Bacteria, Gram-positive, coccus-shaped, colony-forming
description: Floricoccus tropicus DF1 is a Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from fresh flowers of durian tree.
doi: 10.13145/bacdive158537.20250331.9.3
@ref: 65224
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Floricoccus
species: Floricoccus tropicus
strain designation: DF1
type strain: yes
| @ref | gram stain | cell shape | motility | confidence |
|---|---|---|---|---|
| 65224 | positive | coccus-shaped | no | |
| 125438 | no | 94.646 | ||
| 125438 | positive | 93.374 |
| @ref | name | growth | composition |
|---|---|---|---|
| 65224 | all purpose Tween medium | yes | with 1 % (w/v) sodium pyruvate |
| 65224 | brain-heart infusion broth | yes | with 0.1 % (w/v) bromocresol purple |
| 65224 | bile aesculin agar | yes | |
| 65224 | MRS | no | |
| 65224 | M17 lactose agar | no | |
| 65224 | brain-heart infusion agar | yes | |
| 65224 | blood agar base | yes | with 5 % (v/v) sheep blood |
| @ref | growth | type | temperature |
|---|---|---|---|
| 65224 | positive | growth | 15-40 |
| 65224 | positive | optimum | 30-37 |
| 65224 | no | growth | 7 |
| 65224 | no | growth | 45 |
| 67770 | positive | growth | 30 |
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 65224 | positive | growth | 5 | |
| 65224 | positive | growth | 6 | |
| 65224 | positive | growth | 7.5 | |
| 65224 | positive | growth | 9 | alkaliphile |
| 65224 | no | growth | 3 |
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 65224 | NaCl | no | growth | 4 % |
| 65224 | NaCl | no | growth | 5 % |
| 65224 | NaCl | no | growth | 6.5 % |
| @ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
|---|---|---|---|---|
| 65224 | 2-oxogluconate | - | builds acid from | |
| 65224 | 5-dehydro-D-gluconate | - | builds acid from | 58143 |
| 65224 | ribitol | - | builds acid from | 15963 |
| 65224 | amygdalin | + | builds acid from | 27613 |
| 65224 | arbutin | + | builds acid from | 18305 |
| 65224 | arginine | + | hydrolysis | 29016 |
| 65224 | beta-gentiobiose | + | builds acid from | 71422 |
| 65224 | cellobiose | + | builds acid from | 17057 |
| 65224 | citrate | - | assimilation | 16947 |
| 65224 | D-arabinose | - | builds acid from | 17108 |
| 65224 | D-arabitol | - | builds acid from | 18333 |
| 65224 | D-fructose | + | builds acid from | 15824 |
| 65224 | D-fucose | - | builds acid from | 28847 |
| 65224 | D-glucose | + | builds acid from | 17634 |
| 65224 | D-lyxose | - | builds acid from | 62318 |
| 65224 | D-mannose | + | builds acid from | 16024 |
| 65224 | D-tagatose | - | builds acid from | 16443 |
| 65224 | D-xylose | - | builds acid from | 65327 |
| 65224 | galactitol | - | builds acid from | 16813 |
| 65224 | erythritol | - | builds acid from | 17113 |
| 65224 | esculin | + | builds acid from | 4853 |
| 65224 | galactose | - | builds acid from | 28260 |
| 65224 | gelatin | + | hydrolysis | 5291 |
| 65224 | gluconate | - | builds acid from | 24265 |
| 65224 | glucose | + | builds acid from | 17234 |
| 65224 | glucose | + | builds gas from | 17234 |
| 65224 | glucose | + | fermentation | 17234 |
| 65224 | glycerol | - | builds acid from | 17754 |
| 65224 | glycogen | + | builds acid from | 28087 |
| 65224 | hippurate | - | hydrolysis | 606565 |
| 65224 | myo-inositol | - | builds acid from | 17268 |
| 65224 | inulin | - | builds acid from | 15443 |
| 65224 | L-arabinose | - | builds acid from | 30849 |
| 65224 | L-arabitol | - | builds acid from | 18403 |
| 65224 | L-fucose | - | builds acid from | 18287 |
| 65224 | L-sorbose | - | builds acid from | 17266 |
| 65224 | L-xylose | - | builds acid from | 65328 |
| 65224 | lactose | - | builds acid from | 17716 |
| 65224 | maltose | + | builds acid from | 17306 |
| 65224 | mannitol | + | builds acid from | 29864 |
| 65224 | melezitose | + | builds acid from | 6731 |
| 65224 | melibiose | - | builds acid from | 28053 |
| 65224 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
| 65224 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
| 65224 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
| 65224 | milk | - | builds acid from | |
| 65224 | N-acetylglucosamine | + | builds acid from | 506227 |
| 65224 | raffinose | - | builds acid from | 16634 |
| 65224 | rhamnose | - | builds acid from | 26546 |
| 65224 | ribose | - | builds acid from | 33942 |
| 65224 | salicin | + | builds acid from | 17814 |
| 65224 | sorbitol | - | builds acid from | 30911 |
| 65224 | sucrose | + | builds acid from | 17992 |
| 65224 | trehalose | + | builds acid from | 27082 |
| 65224 | turanose | + | builds acid from | 32528 |
| 65224 | xylitol | - | builds acid from | 17151 |
| @ref | Chebi-ID | metabolite | methylred-test | voges-proskauer-test |
|---|---|---|---|---|
| 65224 | 17234 | glucose | + | |
| 65224 | 15688 | acetoin | + |
| @ref | value | activity | ec |
|---|---|---|---|
| 65224 | catalase | - | 1.11.1.6 |
| 65224 | cytochrome oxidase | - | 1.9.3.1 |
| 65224 | naphthol-AS-BI-phosphohydrolase | + | |
| 65224 | alpha-galactosidase | + | 3.2.1.22 |
| 65224 | valine arylamidase | + | |
| 65224 | alkaline phosphatase | - | 3.1.3.1 |
| 65224 | esterase (C 4) | - | |
| 65224 | esterase Lipase (C 8) | - | |
| 65224 | lipase (C 14) | - | |
| 65224 | leucine arylamidase | - | 3.4.11.1 |
| 65224 | leucine aminopeptidase | - | 3.4.1.1 |
| 65224 | cystine arylamidase | - | 3.4.11.3 |
| 65224 | alpha-chymotrypsin | - | 3.4.21.1 |
| 65224 | trypsin | - | 3.4.21.4 |
| 65224 | acid phosphatase | - | 3.1.3.2 |
| 65224 | beta-galactosidase | - | 3.2.1.23 |
| 65224 | beta-glucosidase | - | 3.2.1.21 |
| 65224 | beta-glucuronidase | - | 3.2.1.31 |
| 65224 | alpha-glucosidase | - | 3.2.1.20 |
| 65224 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 65224 | alpha-mannosidase | - | 3.2.1.24 |
| 65224 | alpha-fucosidase | - | 3.2.1.51 |
| 65224 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 65224 | arginine dihydrolase | - | 3.5.3.6 |
| @ref | sample type | sampling date | geographic location | country | origin.country | continent | enrichment culture | enrichment culture composition | enrichment culture duration | enrichment culture temperature | host species |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 65224 | fresh flowers of durian (Durio zibethinus) tree | 2014-12-16 | orchard in Teluk Bahang, Penang | Malaysia | MYS | Asia | all purpose Tween media | with 1 % sodium pyruvate | 1-2 days | 30 | |
| 67770 | Fresh flowers of durian (Durio zibethinus) in an orchard in Teluk Bahang | Penang | Malaysia | MYS | Asia | Durio zibethinus |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Plant | #Flower |
| #Host | #Plants | #Tree |
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Floricoccus tropicus strain DF1 | 1859473.4 | wgs | patric | 1859473 |
| 66792 | Floricoccus tropicus DF1 | 2788500173 | draft | img | 1859473 |
| 67770 | Floricoccus tropicus DF1 | GCA_001832905 | contig | ncbi | 1859473 |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.374 | yes |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 88.346 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 78.089 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 97.762 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.357 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 94.646 | yes |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 66.3 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 61.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 76.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 93.2 |
@ref: 65224
culture collection no.: LMG 29833, JCM 31733
| @id | authors | title | doi/url | journal | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 65224 | Li-Oon Chuah, Kien-Pong Yap, Ahamed Kamal Shamila-Syuhada, Kwai Lin Thong, Rosma Ahmad, Min Tze Liong, Gulam Rusul | Floricoccus tropicus gen. nov., sp. nov. and Floricoccus penangensis sp. nov. isolated from fresh flowers of durian tree and hibiscus | 10.1099/ijsem.0.002386 | IJSEM 67: 4979-4985 2017 | 29034853 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | ||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |
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