@ref: 66532
BacDive-ID: 159681
DSM-Number: 29780
keywords: genome sequence, 16S sequence, psychrophilic
description: Rhizobium aquaticum SA-276 is a psychrophilic prokaryote that was isolated from crater lake.
| @ref | history |
|---|---|
| 66532 | <- T. Felföldi, Eötvös Loránd Univ. Budapest, Hungary; SA-276 |
| 67770 | T. Felföldi; Eötvös Loránd Univ., Hungary; SA-276. |
doi: 10.13145/bacdive159681.20251217.10
@ref: 66532
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium aquaticum
full scientific name: Rhizobium aquaticum Máthé et al. 2019
strain designation: SA-276
type strain: yes
| @ref | growth | type | temperature |
|---|---|---|---|
| 66532 | positive | growth | 20 |
| 67770 | positive | growth | 21 |
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | + | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17632 | nitrate | - | reduction |
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
| 68369 | urease | + | 3.5.1.5 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66532 | - | - | - | - | + | + | - | + | + | - | + | + | + | + | +/- | - | +/- | + | + | - |
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 66532 | crater lake | Lake St. Ana | Romania | ROU | Europe |
| 67770 | Water of Lake St. Ana, a crater lake in the Ciomad Mountains | Harghita County | Romania | ROU | Europe |
| @ref | model | trait | description | prediction | confidence |
|---|---|---|---|---|---|
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98 |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 67.8 |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.2 |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 96 |
@ref: 66532
culture collection no.: DSM 29780, JCM 31760
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66532 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29780 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29780) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 68369 | Automatically annotated from API 20NE | |||
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG | |
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | StrainInfo—the central database for linked microbial strain identifiers | 10.1093/database/baaf059 |
License