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BacDive ID 160967
Type strain
Culture col. no. ATCC 43616 JCM 1050
NCBI tax ID(s) 1601
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.2 (current version):
version 9.2 (current version)

General

@ref: 67770

BacDive-ID: 160967

keywords: 16S sequence, Bacteria, mesophilic

description: Ligilactobacillus agilis JCM 1050 is a mesophilic bacterium that was isolated from Chicken intestine.

NCBI tax id

  • NCBI tax id: 1601
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Mitsuoka ChN-I-2-6.

doi: 10.13145/bacdive160967.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Ligilactobacillus
  • species: Ligilactobacillus agilis
  • full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus agilis

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Ligilactobacillus

species: Ligilactobacillus agilis

full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Chicken intestine

taxonmaps

  • @ref: 69479
  • File name: preview.99_6918.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_3250;97_3988;98_5089;99_6918&stattab=map
  • Last taxonomy: Ligilactobacillus agilis subclade
  • 16S sequence: LC260017
  • Sequence Identity:
  • Total samples: 41290
  • soil counts: 1642
  • aquatic counts: 1961
  • animal counts: 36795
  • plant counts: 892

Sequence information

16S sequences

  • @ref: 67770
  • description: Lactobacillus agilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1050
  • accession: LC260017
  • length: 1513
  • database: nuccore
  • NCBI tax ID: 1601

External links

@ref: 67770

culture collection no.: JCM 1050, ATCC 43616

straininfo link

  • @ref: 113130
  • straininfo: 41941

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113130Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID41941.1