Archive BacDiveID:10.13145/bacdive161201.20251217.10

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BacDive ID 161201

Type strain

Culture col. no. IFM 10308 JCM 12179

NCBI tax ID(s) 120957

Links

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For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 67770

BacDive-ID: 161201

keywords: 16S sequence, mesophilic

description: Nocardia abscessus JCM 12179 is a mesophilic prokaryote that was isolated from Soil.

NCBI tax id

NCBI tax id: 120957
Matching level: species

strain history

@ref: 67770
history: T. Kudo KNJ59.

doi: 10.13145/bacdive161201.20251217.10

Name and taxonomic classification

LPSN

@ref: 20215
description: kingdom/bacillati
keyword: phylum/actinomycetota
phylum: Actinomycetota
class: Actinomycetes
order: Mycobacteriales
family: Nocardiaceae
genus: Nocardia
species: Nocardia abscessus
full scientific name: Nocardia abscessus Yassin et al. 2000

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Nocardia

species: Nocardia abscessus

full scientific name: Nocardia abscessus Yassin et al. 2000

type strain: no

Culture and growth conditions

culture temp

@ref: 67770
growth: positive
type: growth
temperature: 28

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Soil
geographic location: Wako City, Saitama Pref.
country: Japan
origin.country: JPN
continent: Asia

taxonmaps

@ref: 69479
File name: preview.99_5901.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_243;97_280;98_312;99_5901&stattab=map
Last taxonomy: Nocardia
16S sequence: AB115182
Sequence Identity:
Total samples: 14
soil counts: 9
plant counts: 5

Sequence information

16S sequences

@ref: 67770
description: Nocardia abscessus gene for 16S rRNA, partial sequence, strain:KNJ59
accession: AB115182
length: 1441
database: nuccore
NCBI tax ID: 120957

Literature

@ref: 67770

culture collection no.: JCM 12179, IFM 10308

straininfo link

@ref: 126262
straininfo: 111889

Reference

@id	authors	title	doi/url
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer	StrainInfo—the central database for linked microbial strain identifiers	10.1093/database/baaf059

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General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

Culture and growth conditions

culture temp

Isolation, sampling and environmental information

isolation

taxonmaps

Sequence information

16S sequences

Literature

straininfo link

Reference

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