Cite the latest
BacDive paper
×

Rate our new design

Thank you!
BacDive ID 161736
Type strain
Culture col. no. JCM 16161
NCBI tax ID(s) 1295372
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 11 (current version):
version 11 (current version)

General

@ref: 67770

BacDive-ID: 161736

keywords: genome sequence, Bacteria

description: Actinomadura luteofluorescens JCM 16161 is a bacterium of the family Thermomonosporaceae.

NCBI tax id

  • NCBI tax id: 1295372
  • Matching level: species

strain history

  • @ref: 67770
  • history: JCM <-- T. Itoh IC-239.

doi: 10.13145/bacdive161736.20260601.11

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinomadura
  • species: Actinomadura luteofluorescens
  • full scientific name: Actinomadura luteofluorescens (Shinobu 1962) Preobrazhenskaya et al. 1975 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Actinomadura glauciflava
    20215Streptomyces luteofluorescens

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Thermomonosporaceae

genus: Vulcanisaeta

species: Vulcanisaeta sp.

full scientific name: Vulcanisaeta sp.

type strain: no

Morphology

cell morphology

  • @ref: 125439
  • motility: no
  • confidence: 92.353

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 85

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: facultative anaerobe
  • confidence: 96.5

Sequence information

Genome sequences

  • @ref: 66792
  • description: ASM131628v1 assembly for Vulcanisaeta sp. JCM 16161
  • assembly level: contig
  • INSDC accession: GCA_001316285
  • BV-BRC accession: 1295372.3
  • IMG accession: 2681813043
  • NCBI tax ID: 1295372
  • score: 36.89

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidence
125439BacteriaNetgram_stainReaction to gram-stainingpositive77.98
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthfacultative anaerobe96.5
125439BacteriaNetmotilityAbility to perform movementno92.353
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes70.124

Literature

@ref: 67770

culture collection no.: JCM 16161

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG