@ref: 67770
BacDive-ID: 162471
keywords: genome sequence, Bacteria, mesophilic, Gram-negative, pigmented
description: Algibacter lectus JCM 19300 is a mesophilic, Gram-negative bacterium that has a yellow pigmentation and was isolated from Coastal sediment.
doi: 10.13145/bacdive162471.20250331.9.3
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Algibacter
species: Algibacter lectus
full scientific name: Algibacter lectus Nedashkovskaya et al. 2004
type strain: no
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 93 | |
| 125438 | 98.981 | negative | |
| 125439 | 99.5 | negative |
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 90.795 |
| 125439 | no | 99.1 |
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Algibacter lectus JCM 19300 | 221126.3 | wgs | patric | 221126 |
| 66792 | Algibacter lectus JCM 19300 | 2609460214 | draft | img | 221126 |
| 67770 | Algibacter lectus JCM 19300 | GCA_000764755 | contig | ncbi | 221126 |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.981 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.72 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.795 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.956 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 93 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 67.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.5 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 93.1 |
@ref: 67770
culture collection no.: JCM 19300
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |
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