Archive BacDiveID:10.13145/bacdive162602.20250331.9.3

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BacDive ID 162602

Type strain

Culture col. no. NBRC 12692 LMG 959 IFO 12692 IAM 1554 BCRC 12495 2 more

NCBI tax ID(s) 40324

Links

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For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 67770

BacDive-ID: 162602

keywords: 16S sequence, Bacteria, mesophilic

description: Stenotrophomonas maltophilia JCM 1976 is a mesophilic bacterium that was isolated from Japanese paddy.

NCBI tax id

NCBI tax id: 40324
Matching level: species

strain history

@ref: 67770
history: K. Suzuki KS 0002 <-- IAM 1554 <-- K. Komagata YF-3.

doi: 10.13145/bacdive162602.20250331.9.3

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Lysobacterales
family: Lysobacteraceae
genus: Stenotrophomonas
species: Stenotrophomonas maltophilia
full scientific name: Stenotrophomonas maltophilia (Hugh 1981 ex Hugh and Ryschenkow 1961) Palleroni and Bradbury 1993
synonyms
@ref synonym
20215 Xanthomonas maltophilia
20215 Pseudomonas maltophilia
20215 Stenotrophomonas africana

@ref	synonym
20215	Xanthomonas maltophilia
20215	Pseudomonas maltophilia
20215	Stenotrophomonas africana

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Lysobacteraceae

genus: Stenotrophomonas

species: Stenotrophomonas maltophilia

full scientific name: Stenotrophomonas maltophilia (Hugh 1981) Palleroni and Bradbury 1993

type strain: no

Culture and growth conditions

culture temp

@ref: 67770
growth: positive
type: growth
temperature: 30

Physiology and metabolism

observation

@ref: 67770
observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Japanese paddy

taxonmaps

@ref: 69479
File name: preview.99_186.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_26;97_27;98_30;99_186&stattab=map
Last taxonomy: Stenotrophomonas
16S sequence: LC379123
Sequence Identity:
Total samples: 10451
soil counts: 1650
aquatic counts: 1647
animal counts: 6387
plant counts: 767

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
67770	Stenotrophomonas maltophilia gene for 16S rRNA, partial sequence, strain: JCM 1976	LC379123	1469	nuccore	40324
124043	Stenotrophomonas maltophilia gene for 16S ribosomal RNA, partial sequence, strain: JCM 1976.	AB294554	1541	nuccore	40324
124043	Stenotrophomonas maltophilia gene for 16S rRNA, partial sequence, strain: NBRC 12692.	AB680321	1472	nuccore	40324
124043	Stenotrophomonas maltophilia strain BCRC 12495 16S-23S ribosomal RNA intergenic spacer, complete sequence.	EU014540	497	nuccore	40324

GC content

@ref: 67770
GC-content: 66.9

External links

@ref: 67770

culture collection no.: JCM 1976, ATCC 17806, BCRC 12495, IAM 1554, IFO 12692, LMG 959, NBRC 12692

straininfo link

@ref: 113501
straininfo: 6102

literature

topic: Metabolism
Pubmed-ID: 19902207
title: Continuous 2-Keto-L-gulonic acid fermentation by mixed culture of Ketogulonicigenium vulgare DSM 4025 and Bacillus megaterium or Xanthomonas maltophilia.
authors: Takagi Y, Sugisawa T, Hoshino T
journal: Appl Microbiol Biotechnol
DOI: 10.1007/s00253-009-2312-1
year: 2009
mesh: Bacillus megaterium/metabolism, Coculture Techniques, Fermentation, Rhodobacteraceae/*metabolism, Sorbose/metabolism, Stenotrophomonas maltophilia/*metabolism, Sugar Acids/*metabolism

Reference

@id	authors	title	doi/url
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
113501	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID6102.1
124043	Isabel Schober, Julia Koblitz	Data extracted from sequence databases, automatically matched based on designation and taxonomy

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Archive

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

synonyms

Culture and growth conditions

culture temp

Physiology and metabolism

observation

Isolation, sampling and environmental information

isolation

taxonmaps

Sequence information

16S sequences

GC content

External links

straininfo link

literature

Reference

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