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BacDive ID 162817
Type strain
Culture col. no. NBRC 12049 IFO 12049 IAM 1650 JCM 20237
NCBI tax ID(s) 296
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 10 (current version):
version 10 (current version)

General

@ref: 67770

BacDive-ID: 162817

keywords: 16S sequence, mesophilic

description: Pseudomonas fragi JCM 20237 is a mesophilic prokaryote of the family Pseudomonadaceae.

NCBI tax id

  • NCBI tax id: 296
  • Matching level: species

strain history

  • @ref: 67770
  • history: IAM 1650 <-- N. Yano.

doi: 10.13145/bacdive162817.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/pseudomonadati
  • keyword: phylum/pseudomonadota
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas fragi
  • full scientific name: Pseudomonas fragi (Eichholz 1902) Gruber 1905 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacterium fragi

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas fragi

full scientific name: Pseudomonas fragi (Eichholz 1902) Gruber 1905

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 25

Sequence information

16S sequences

  • @ref: 124043
  • description: Pseudomonas fragi gene for 16S rRNA, partial sequence, strain: NBRC 12049.
  • accession: AB680221
  • length: 1462
  • database: nuccore
  • NCBI tax ID: 296

Literature

@ref: 67770

culture collection no.: JCM 20237, IAM 1650, IFO 12049, NBRC 12049

straininfo link

  • @ref: 126262
  • straininfo: 62664

literature

topicPubmed-IDtitleauthorsjournalDOIyearmesh
Enzymology1476423Cloning of the Pseudomonas glumae lipase gene and determination of the active site residues.Frenken LG, Egmond MR, Batenburg AM, Bos JW, Visser C, Verrips CT.Appl Environ Microbiol10.1128/aem.58.12.3787-3791.19921992enzymology, genetics, genetics
1599260Cloning, expression, and nucleotide sequence of a lipase gene from Pseudomonas fluorescens B52.Tan Y, Miller KJ.Appl Environ Microbiol10.1128/aem.58.4.1402-1407.19921992genetics, genetics
Enzymology1856176Extracellular lipase of Pseudomonas sp. strain ATCC 21808: purification, characterization, crystallization, and preliminary X-ray diffraction data.Kordel M, Hofmann B, Schomburg D, Schmid RD.J Bacteriol10.1128/jb.173.15.4836-4841.19911991enzymology, chemistry, chemistry
1987151Cloning, sequence, and expression of a lipase gene from Pseudomonas cepacia: lipase production in heterologous hosts requires two Pseudomonas genes.Jorgensen S, Skov KW, Diderichsen B.J Bacteriol10.1128/jb.173.2.559-567.19911991genetics, genetics, Genes, Bacterial
Enzymology3060375Cloning, sequencing and expression of the lipase gene from Pseudomonas fragi IFO-12049 in E. coli.Aoyama S, Yoshida N, Inouye S.FEBS Lett10.1016/0014-5793(88)80980-31988genetics, genetics, genetics, Cloning, Molecular, Gene Expression Regulation
8144462The lipA gene of Serratia marcescens which encodes an extracellular lipase having no N-terminal signal peptide.Akatsuka H, Kawai E, Omori K, Komatsubara S, Shibatani T, Tosa T.J Bacteriol10.1128/jb.176.7.1949-1956.19941994genetics, genetics, Protein Sorting Signals, genetics, genetics
Enzymology8368830Purification, gene cloning, amino acid sequence analysis, and expression of an extracellular lipase from an Aeromonas hydrophila human isolate.Anguita J, Rodriguez Aparicio LB, Naharro G.Appl Environ Microbiol10.1128/aem.59.8.2411-2417.19931993enzymology, genetics, genetics, Genes, Bacterial

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. ReimerStrainInfo—the central database for linked microbial strain identifiers10.1093/database/baaf059