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BacDive ID 163941
Type strain
Strain Designation Z022
Culture col. no. CGMCC 4.7273 JCM 31053 Z022
NCBI tax ID(s) 1442032
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.3 (current version):
version 9.3 (current version)

General

@ref: 67770

BacDive-ID: 163941

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, pigmented

description: Streptomyces dangxiongensis Z022 is an aerobe, spore-forming, mesophilic bacterium that has a brown pigmentation and was isolated from Soil from Dangxiong.

NCBI tax id

  • NCBI tax id: 1442032
  • Matching level: species

strain history

  • @ref: 67770
  • history: W. Zhang; Cold & Arid Reg. Environ. & Eng. Res. Inst., CAS, China; Z022.

doi: 10.13145/bacdive163941.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces dangxiongensis
  • full scientific name: Streptomyces dangxiongensis Zhang et al. 2019

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces dangxiongensis

full scientific name: Streptomyces dangxiongensis Zhang et al. 2019

strain designation: Z022

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
68168positiveno
125439positive99.6

multicellular morphology

  • @ref: 68168
  • forms multicellular complex: yes
  • complex color: depending on medium: Aerial mycelia are whitish (ISP 2, ISP 4, ISP 5, ISP 7, Czapek's agar), grey (ISP 3) or light yellow (ISP 6, nutrient agar)
  • medium name: ISP2, ISP3, ISP4, ISP5, ISP6, ISP7,Czapek's agar, nutrient agar
  • further description: branch substrate hyphae and aerial mycelium mycelium that differentiates into straight chains with spiny and/or hairy spores

pigmentation

  • @ref: 68168
  • production: yes
  • color: brown

Culture and growth conditions

culture temp

@refgrowthtypetemperature
67770positivegrowth28
68168positivegrowth20-40
68168positiveoptimum30

culture pH

@refabilitytypepHPH range
68168positivegrowth5-9alkaliphile
68168positiveoptimum7-8

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
68168aerobe
125439obligate aerobe97.2

spore formation

@refspore descriptiontype of sporespore formationconfidence
68168aerial mycelium differentiates into straight chains with spiny and/or hairy spores.sporeyes
125438yes93.128

halophily

@refsaltgrowthtested relationconcentration
68168NaClpositivegrowth0-7 %(w/v)
68168NaClpositiveoptimum0-2 %(w/v)

observation

@refobservation
67770quinones: MK-9(H8), MK-9(H6)
68168forms branch substrate hyphae and aerial mycelium that differentiates into straight chains with spiny and/or hairy spores

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6816830849L-arabinose+carbon source
6816815824D-fructose+carbon source
6816817634D-glucose+carbon source
6816812936D-galactose+carbon source
6816817716lactose+/-carbon source
6816816899D-mannitol+/-carbon source
6816865327D-xylose+/-carbon source
6816817268myo-inositol-carbon source
6816816634raffinose-carbon source
6816862345L-rhamnose-carbon source
6816817992sucrose-carbon source
6816816977L-alanine+nitrogen source
6816817196L-asparagine+nitrogen source
6816815971L-histidine+nitrogen source
6816817561L-cysteine+nitrogen source
6816825017leucine-nitrogen source
6816828017starch+degradation
6816862968cellulose+degradation
681685291gelatin+degradation
6816853424tween 20+degradation
6816853426tween 80+degradation
6816816199urea+degradation

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    68168C14:0 iso2.1
    68168C15:0 iso7.3
    68168C15:0 anteiso25.7
    68168C16:04.7
    68168C16:0 iso14.3
    68168C16:1 iso H6.5
    68168C16:1 anteiso w9c5
    68168C17:0 iso2.7
    68168C17:0 anteiso11.9
    68168C17:1 anteiso w9c8.4
    68168C18:1 w7c/C18:1 w6c2.5
    68168C16:0 10-methyl/C17:1 iso w9c4.2
  • type of FA analysis: whole cell analysis
  • incubation medium: TSB
  • incubation temperature: 30
  • incubation time: 10
  • library/peak naming table: TSBA 5.0
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling datelatitudelongitudeenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
67770Soil from DangxiongTibetChinaCHNAsia
68168grass soil sampleDangxiong, Lhasa city, Tibet Autonomous RegionChinaCHNAsia2014-03-0130.3391.52Gause's synthetic agarsupplemented with nalidixic acid (25 g/ml)7 days28

Sequence information

16S sequences

  • @ref: 68168
  • description: Streptomyces dangxiongensis 16S ribosomal RNA gene, partial sequence
  • accession: KF729589
  • length: 1491
  • database: nuccore
  • NCBI tax ID: 1442032

Genome sequences

  • @ref: 67770
  • description: Streptomyces dangxiongensis Z022
  • accession: GCA_003675325
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 1442032

GC content

  • @ref: 67770
  • GC-content: 72.16
  • method: genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes88.626yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.06yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes89.401yes
125438spore-formingspore-formingAbility to form endo- or exosporesyes93.128yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.5yes
125438motile2+flagellatedAbility to perform flagellated movementno88yes
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes88.9
125439BacteriaNetmotilityAbility to perform movementno87.6
125439BacteriaNetgram_stainReaction to gram-stainingpositive99.6
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe97.2

External links

@ref: 67770

culture collection no.: JCM 31053, CGMCC 4.7273

literature

  • topic: Phylogeny
  • Pubmed-ID: 31232681
  • title: Streptomyces dangxiongensis sp. nov., isolated from soil of Qinghai-Tibet Plateau.
  • authors: Zhang B, Tang S, Yang R, Chen X, Zhang D, Zhang W, Li S, Chen T, Liu G, Dyson P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003550
  • year: 2019
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Tibet, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68168Binglin Zhang, Shukun Tang, Ruiqi Yang, Ximing Chen, Dongming Zhang, Wei Zhang, Shiweng Li, Tuo Chen, Guangxiu Liu and Paul DysonStreptomyces dangxiongensis sp. nov., isolated from soil of Qinghai-Tibet Plateau10.1099/ijsem.0.003550IJSEM 69: 2729-2734 2019
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG

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