Archive BacDiveID:10.13145/bacdive164257.20251217.10

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BacDive ID 164257

Type strain

Culture col. no. MCC 2761 LMG 28646 KCTC 39527 JCM 32432

NCBI tax ID(s) 1612203

Links

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For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 67770

BacDive-ID: 164257

keywords: genome sequence, 16S sequence, mesophilic

description: Cellulosimicrobium funkei JCM 32432 is a mesophilic prokaryote that was isolated from Panagal freshwater reservoir at Nalgonda.

NCBI tax id

NCBI tax id: 1612203
Matching level: species

strain history

@ref: 67770
history: LMG 28646 <-- V. R. Sultanpuram; Mahatma Gandhi Univ., India; 3bp.

doi: 10.13145/bacdive164257.20251217.10

Name and taxonomic classification

LPSN

@ref: 20215
description: kingdom/bacillati
keyword: phylum/actinomycetota
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Promicromonosporaceae
genus: Cellulosimicrobium
species: Cellulosimicrobium funkei
full scientific name: Cellulosimicrobium funkei Brown et al. 2006
synonyms
- @ref: 20215
- synonym: Cellulosimicrobium aquatile

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Promicromonosporaceae

genus: Cellulosimicrobium

species: Cellulosimicrobium funkei

full scientific name: Cellulosimicrobium funkei Brown et al. 2006

type strain: no

Morphology

cell morphology

@ref: 125439
gram stain: positive
confidence: 100

Culture and growth conditions

culture temp

@ref: 67770
growth: positive
type: growth
temperature: 28

Physiology and metabolism

oxygen tolerance

@ref: 125439
oxygen tolerance: obligate aerobe
confidence: 99.5

spore formation

@ref: 125439
spore formation: yes
confidence: 93

observation

@ref: 67770
observation: quinones: MK-9(H₄)

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Panagal freshwater reservoir at Nalgonda
geographic location: Telangana
country: India
origin.country: IND
continent: Asia

taxonmaps

@ref: 69479
File name: preview.99_256.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_179;97_195;98_218;99_256&stattab=map
Last taxonomy: Cellulosimicrobium
16S sequence: LN812019
Sequence Identity:
Total samples: 5475
soil counts: 1873
aquatic counts: 417
animal counts: 1680
plant counts: 1505

Sequence information

Genome sequences

@ref: 67770
description: IMG-taxon 2681812868 annotated assembly for Cellulosimicrobium aquatile 3bp
assembly level: contig
INSDC accession: GCA_900155925
IMG accession: 2681812868
NCBI tax ID: 1612203
score: 75.39

16S sequences

@ref: 67770
description: Cellulosimicrobium aquatile partial 16S rRNA gene,type strain 3bpT
accession: LN812019
length: 1436
database: nuccore
NCBI tax ID: 1612203

GC content

@ref: 67770
GC-content: 73.8
method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@ref	model	trait	description	prediction	confidence	training_data
125438	gram-positive	gram-positive	Positive reaction to Gram-staining	yes	86.365	no
125438	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	91.2	no
125438	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	yes	76.057	no
125438	spore-forming	spore-forming	Ability to form endo- or exospores	no	55.163	no
125438	thermophile	thermophilic	Ability to grow at temperatures above or equal to 45°C	no	97.5	no
125438	motile2+	flagellated	Ability to perform flagellated movement	no	67.5	no
125439	BacteriaNet	spore_formation	Ability to form endo- or exospores	yes	93
125439	BacteriaNet	motility	Ability to perform movement	no	86.6
125439	BacteriaNet	gram_stain	Reaction to gram-staining	positive	100
125439	BacteriaNet	oxygen_tolerance	Oxygenic conditions needed for growth	obligate aerobe	99.5

Literature

@ref: 67770

culture collection no.: JCM 32432, KCTC 39527, LMG 28646, MCC 2761

straininfo link

@ref: 126262
straininfo: 273071

literature

topic: Phylogeny
Pubmed-ID: 26373417
title: Cellulosimicrobium aquatile sp. nov., isolated from Panagal reservoir, Nalgonda, India.
authors: Sultanpuram VR, Mothe T, Chintalapati S, Chintalapati VR
journal: Antonie Van Leeuwenhoek
DOI: 10.1007/s10482-015-0588-y
year: 2015
mesh: Actinobacteria/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, India, Lysine/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis
topic2: Genetics

Reference

@id	authors	title	doi/url
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann	Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets	10.1101/2024.08.12.607695
125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy	deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1	https://github.com/GenomeNet/deepG
126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer	StrainInfo—the central database for linked microbial strain identifiers	10.1093/database/baaf059

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Archive

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

synonyms

Morphology

cell morphology

Culture and growth conditions

culture temp

Physiology and metabolism

oxygen tolerance

spore formation

observation

Isolation, sampling and environmental information

isolation

taxonmaps

Sequence information

Genome sequences

16S sequences

GC content

Genome-based predictions

predictions

Literature

straininfo link

literature

Reference

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