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BacDive ID 164384
Type strain
Culture col. no. JCM 32844
NCBI tax ID(s) 2585117
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.2 (current version):
version 9.2 (current version)

General

@ref: 67770

BacDive-ID: 164384

keywords: 16S sequence, Bacteria, mesophilic

description: Alistipes onderdonkii subsp. vulgaris JCM 32844 is a mesophilic bacterium that was isolated from Feces of a woman in the forties.

NCBI tax id

  • NCBI tax id: 2585117
  • Matching level: subspecies

strain history

  • @ref: 67770
  • history: M. Sakamoto; RIKEN BRC-JCM, Japan; 3EGH33.

doi: 10.13145/bacdive164384.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Rikenellaceae
  • genus: Alistipes
  • species: Alistipes onderdonkii subsp. vulgaris
  • full scientific name: Alistipes onderdonkii subsp. vulgaris Sakamoto et al. 2020

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Rikenellaceae

genus: Alistipes

species: Alistipes onderdonkii subsp. vulgaris

full scientific name: Alistipes onderdonkii subsp. vulgaris Sakamoto et al. 2020

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Feces of a woman in the forties
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_959.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_110;96_474;97_648;98_749;99_959&stattab=map
  • Last taxonomy: Alistipes onderdonkii subclade
  • 16S sequence: LC468791
  • Sequence Identity:
  • Total samples: 177009
  • soil counts: 1356
  • aquatic counts: 5936
  • animal counts: 169152
  • plant counts: 565

Sequence information

16S sequences

  • @ref: 67770
  • description: Alistipes onderdonkii subsp. vulgaris 3EGH33 gene for 16S ribosomal RNA, partial sequence
  • accession: LC468791
  • length: 1459
  • database: nuccore
  • NCBI tax ID: 2585117

External links

@ref: 67770

culture collection no.: JCM 32844

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/