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BacDive ID 164507
Type strain
Culture col. no. JCM 33296
NCBI tax ID(s) 518738
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.2 (current version):
version 9.2 (current version)

General

@ref: 67770

BacDive-ID: 164507

keywords: 16S sequence, Bacteria, psychrophilic

description: Shewanella vesiculosa JCM 33296 is a psychrophilic bacterium that was isolated from Intestine of a horse mackerel .

NCBI tax id

  • NCBI tax id: 518738
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Kurihara; Kyoto Univ., Japan; HM13.

doi: 10.13145/bacdive164507.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella vesiculosa
  • full scientific name: Shewanella vesiculosa Bozal et al. 2009

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella vesiculosa

full scientific name: Shewanella vesiculosa Bozal et al. 2009

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 18

Physiology and metabolism

observation

  • @ref: 67770
  • observation: Production of Extracellular membrane vesicles

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Intestine of a horse mackerel (Trachurus japonicus)
  • host species: Trachurus japonicus

taxonmaps

  • @ref: 69479
  • File name: preview.99_2178.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_126;97_1400;98_1701;99_2178&stattab=map
  • Last taxonomy: Shewanella
  • 16S sequence: LC461000
  • Sequence Identity:
  • Total samples: 11713
  • soil counts: 472
  • aquatic counts: 8506
  • animal counts: 2645
  • plant counts: 90

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Shewanella sp. HM13 gene for 16S ribosomal RNA, partial sequence, clone: ALC4609991506nuccore50422
67770Shewanella sp. HM13 gene for 16S ribosomal RNA, partial sequence, clone: BLC4610001506nuccore50422

External links

@ref: 67770

culture collection no.: JCM 33296

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/