Archive BacDiveID:10.13145/bacdive164522.20251217.10

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BacDive ID 164522

Type strain

Culture col. no. KCTC 72225 JCM 33344

NCBI tax ID(s) 2494560

Links

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For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 67770

BacDive-ID: 164522

keywords: genome sequence, 16S sequence, mesophilic

description: Patiriisocius marinistellae JCM 33344 is a mesophilic prokaryote that was isolated from Surface of a starfish, Patiria pectinifera.

NCBI tax id

NCBI tax id: 2494560
Matching level: species

strain history

@ref: 67770
history: H. Itoh and K. Kawano; AIST, Japan; KK4.

doi: 10.13145/bacdive164522.20251217.10

Name and taxonomic classification

LPSN

@ref: 20215
description: kingdom/pseudomonadati
keyword: phylum/bacteroidota
phylum: Bacteroidota
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Patiriisocius
species: Patiriisocius marinistellae
full scientific name: Patiriisocius marinistellae Kawano et al. 2020

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Patiriisocius

species: Patiriisocius marinistellae

full scientific name: Patiriisocius marinistellae Kawano et al. 2020

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
125438	no	92.5
125438		98.825	negative
125439		98.8	negative

Culture and growth conditions

culture temp

@ref: 67770
growth: positive
type: growth
temperature: 25

Physiology and metabolism

oxygen tolerance

@ref: 125439
oxygen tolerance: obligate aerobe
confidence: 97.4

spore formation

@ref	spore formation	confidence
125438	no	91.333
125439	no	92.1

observation

@ref: 67770
observation: quinones: MK-6

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Surface of a starfish, Patiria pectinifera
host species: Patiria pectinifera
geographic location: coast of Hokkaido
country: Japan
origin.country: JPN
continent: Asia

Sequence information

Genome sequences

@ref: 67770
description: ASM901463v1 assembly for Patiriisocius marinistellae KK4
assembly level: contig
INSDC accession: GCA_009014635
BV-BRC accession: 2494560.3
IMG accession: 2890600126
NCBI tax ID: 2494560
score: 73.39

16S sequences

@ref: 67770
description: Patiriisocius marinistellae gene for 16S ribosomal RNA, partial sequence
accession: LC436787
length: 1477
database: nuccore
NCBI tax ID: 2494560

GC content

@ref: 67770
GC-content: 33.4
method: genome sequence analysis

Genome-based predictions

predictions

@ref	model	trait	description	prediction	confidence	training_data
125438	gram-positive	gram-positive	Positive reaction to Gram-staining	no	98.825	no
125438	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	97.502	no
125438	spore-forming	spore-forming	Ability to form endo- or exospores	no	91.333	no
125438	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	yes	86.762	no
125438	thermophile	thermophilic	Ability to grow at temperatures above or equal to 45°C	no	95.524	no
125438	motile2+	flagellated	Ability to perform flagellated movement	no	92.5	no
125439	BacteriaNet	spore_formation	Ability to form endo- or exospores	no	92.1
125439	BacteriaNet	motility	Ability to perform movement	no	54.2
125439	BacteriaNet	gram_stain	Reaction to gram-staining	negative	98.8
125439	BacteriaNet	oxygen_tolerance	Oxygenic conditions needed for growth	obligate aerobe	97.4

Literature

@ref: 67770

culture collection no.: JCM 33344, KCTC 72225

straininfo link

@ref: 126262
straininfo: 25701

literature

topic: Phylogeny
Pubmed-ID: 32539909
title: Patiriisocius marinistellae gen. nov., sp. nov., isolated from the starfish Patiria pectinifera, and reclassification of Ulvibacter marinus as a member of the genus Patiriisocius comb. nov.
authors: Kawano K, Ushijima N, Kihara M, Itoh H
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijsem.0.004254
year: 2020
mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Starfish/*microbiology, Vitamin K 2/analogs & derivatives/chemistry
topic2: Transcriptome

Reference

@id	authors	title	doi/url
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann	Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets	10.1101/2024.08.12.607695
125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy	deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1	https://github.com/GenomeNet/deepG
126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer	StrainInfo—the central database for linked microbial strain identifiers	10.1093/database/baaf059

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General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

Morphology

cell morphology

Culture and growth conditions

culture temp

Physiology and metabolism

oxygen tolerance

spore formation

observation

Isolation, sampling and environmental information

isolation

Sequence information

Genome sequences

16S sequences

GC content

Genome-based predictions

predictions

Literature

straininfo link

literature

Reference

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