Archive BacDiveID:10.13145/bacdive164544.20251217.10

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BacDive ID 164544

Type strain

Culture col. no. CGMCC 1.16978 JCM 33392

NCBI tax ID(s) 2724944

Links

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For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 67770

BacDive-ID: 164544

keywords: genome sequence, 16S sequence, mesophilic

description: Arthrobacter mobilis JCM 33392 is a mesophilic prokaryote that was isolated from Desert soil in Cholistan desert.

NCBI tax id

NCBI tax id: 2724944
Matching level: species

strain history

@ref: 67770
history: C.-H. Sun; Chin. Acad. of Med. Sci., China; E918.

doi: 10.13145/bacdive164544.20251217.10

Name and taxonomic classification

LPSN

@ref: 20215
description: kingdom/bacillati
keyword: phylum/actinomycetota
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter mobilis
full scientific name: Arthrobacter mobilis Ye et al. 2020

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter mobilis

full scientific name: Arthrobacter mobilis Ye et al. 2020

type strain: yes

Culture and growth conditions

culture temp

@ref: 67770
growth: positive
type: growth
temperature: 28

Physiology and metabolism

oxygen tolerance

@ref: 125439
oxygen tolerance: obligate aerobe
confidence: 97.7

spore formation

@ref: 125439
spore formation: no
confidence: 90.3

observation

@ref: 67770
observation: quinones: MK-9(H₂)

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Desert soil in Cholistan desert
country: Pakistan
origin.country: PAK
continent: Asia

Sequence information

Genome sequences

@ref: 67770
description: ASM1239583v1 assembly for Arthrobacter mobilis E918
assembly level: scaffold
INSDC accession: GCA_012395835
BV-BRC accession: 2724944.3
IMG accession: 2903064123
NCBI tax ID: 2724944
score: 42.46

16S sequences

@ref: 67770
description: Arthrobacter mobilis 16S ribosomal RNA gene, partial sequence
accession: MT326212
length: 1566
database: nuccore
NCBI tax ID: 2724944

GC content

@ref: 67770
GC-content: 68.69
method: genome sequence analysis

Genome-based predictions

predictions

@ref	model	trait	description	prediction	confidence	training_data
125438	gram-positive	gram-positive	Positive reaction to Gram-staining	yes	88.421	no
125438	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	98.758	no
125438	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	yes	87.523	no
125438	spore-forming	spore-forming	Ability to form endo- or exospores	no	64.713	no
125438	thermophile	thermophilic	Ability to grow at temperatures above or equal to 45°C	no	97	yes
125438	motile2+	flagellated	Ability to perform flagellated movement	no	73.5	no
125439	BacteriaNet	spore_formation	Ability to form endo- or exospores	no	90.3
125439	BacteriaNet	motility	Ability to perform movement	yes	64.6
125439	BacteriaNet	gram_stain	Reaction to gram-staining	negative	89.5
125439	BacteriaNet	oxygen_tolerance	Oxygenic conditions needed for growth	obligate aerobe	97.7

Literature

@ref: 67770

culture collection no.: JCM 33392, CGMCC 1.16978

straininfo link

@ref: 126262
straininfo: 390887

literature

topic: Phylogeny
Pubmed-ID: 32886595
title: Arthrobacter mobilis sp. nov., a novel actinobacterium isolated from Cholistan desert soil.
authors: Ye JJ, Liu SW, Lu QP, Cheema MT, Abbas M, Sajid I, Huang DL, Sun CH
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijsem.0.004431
year: 2020
mesh: Arthrobacter/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Desert Climate, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, Pakistan, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
topic2: Transcriptome

Reference

@id	authors	title	doi/url
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann	Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets	10.1101/2024.08.12.607695
125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy	deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1	https://github.com/GenomeNet/deepG
126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer	StrainInfo—the central database for linked microbial strain identifiers	10.1093/database/baaf059

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General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

Culture and growth conditions

culture temp

Physiology and metabolism

oxygen tolerance

spore formation

observation

Isolation, sampling and environmental information

isolation

Sequence information

Genome sequences

16S sequences

GC content

Genome-based predictions

predictions

Literature

straininfo link

literature

Reference

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